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22 result(s) for 'author#Kazutaka Katoh' within BMC
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Citation: The Journal of Physiological Sciences 2019 69(Suppl 1):673
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Poster Presentations
Citation: The Journal of Physiological Sciences 2014 64(Suppl 1):BF03405837 -
Poster Presentations
Citation: The Journal of Physiological Sciences 2015 65(Suppl 1):BF03405846 -
Poster Presentations
Citation: The Journal of Physiological Sciences 2015 65(Suppl 1):BF03405847 -
Abstract
Citation: The Journal of Physiological Sciences 2009 59(Suppl 1):BF03405813 -
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
In a previous paper, we introduced MUSCLE, a new program for creating multiple alignments of protein sequences, giving a brief summary of the algorithm and showing MUSCLE to achieve the highest scores reported...
Citation: BMC Bioinformatics 2004 5:113 -
Selected abstracts of Bioinformatics: from Algorithms to Applications 2021 Conference
Citation: BMC Bioinformatics 2021 22(Suppl 16):591 -
Sequence embedding for fast construction of guide trees for multiple sequence alignment
The most widely used multiple sequence alignment methods require sequences to be clustered as an initial step. Most sequence clustering methods require a full distance matrix to be computed between all pairs o...
Citation: Algorithms for Molecular Biology 2010 5:21 -
Sequence characteristics, genetic diversity and phylogenetic analysis of the Cucurbita ficifolia (Cucurbitaceae) chloroplasts genome
Curcubita ficifolia Bouché (Cucurbitaceae) has high value as a food crop and medicinal plant, and also has horticultural value as rootstock for other melon species. China is home to many different cultivars, but ...
Citation: BMC Genomics 2024 25:384 -
Chloroplast genome characteristic, comparative and phylogenetic analyses in Capsicum (Solanaceae)
Capsicum (Solanaceae) is a globally important vegetable crop and is also used therapeutically in traditional medicine systems. However, little is known of the genetic variation within the commonly grown cultivars...
Citation: BMC Genomics 2024 25:1052 -
Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes
Phylogenetic analyses of jawed vertebrates based on mitochondrial sequences often result in confusing inferences which are obviously inconsistent with generally accepted trees. In particular, in a hypothesis b...
Citation: BMC Biology 2004 2:3 -
Stability of the HTLV-1 glycoprotein 46 (gp46) gene in an endemic region of the Brazilian Amazon and the presence of a significant mutation (N93D) in symptomatic patients
The human T-lymphotropic virus type 1 (HTLV-1) affects 2–5 million people worldwide, and is associated with a number of degenerative and infectious diseases. The Envelope glycoproteins (gp) are highly conserve...
Citation: Virology Journal 2018 15:80 -
ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone
DNA barcodes are a useful tool for discovering, understanding, and monitoring biodiversity which are critical tasks at a time of rapid biodiversity loss. However, widespread adoption of barcodes requires cost-...
Citation: BMC Biology 2021 19:217 -
Antibody responses to two new Lactococcus lactis-produced recombinant Pfs48/45 and Pfs230 proteins increase with age in malaria patients living in the Central Region of Ghana
Recent advances in malaria control efforts have led to an increased number of national malaria control programmes implementing pre-elimination measures and demonstrated the need to develop new tools to track a...
Citation: Malaria Journal 2017 16:306 -
BMC Bioinformatics reviewer acknowledgement 2015
The editors of BMC Bioinformatics would like to thank all our reviewers who have contributed to the journal in Volume 16 (2015).
Citation: BMC Bioinformatics 2016 17:79 -
The clinical impact of late gadolinium enhancement in Takotsubo cardiomyopathy: serial analysis of cardiovascular magnetic resonance images
Our study aimed to investigate both the clinical implications of late gadolinium enhancement (LGE) by cardiovascular magnetic resonance (CMR) and the relation of LGE to clinical findings in patients with Takot...
Citation: Journal of Cardiovascular Magnetic Resonance 2011 13:67 -
A pipeline for complete characterization of complex germline rearrangements from long DNA reads
Many genetic/genomic disorders are caused by genomic rearrangements. Standard methods can often characterize these variations only partly, e.g., copy number changes or breakpoints. It is important to fully und...
Citation: Genome Medicine 2020 12:67 -
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations of the Sankoff algorithm, have resulted in...
Citation: BMC Bioinformatics 2008 9:212 -
Associations between the orexin (hypocretin) receptor 2 gene polymorphism Val308Ile and nicotine dependence in genome-wide and subsequent association studies
Many genetic and environmental factors are involved in the etiology of nicotine dependence. Although several candidate gene variations have been reported by candidate gene studies or genome-wide association st...
Citation: Molecular Brain 2015 8:50 -
From benchmarking alignment of genome assemblies to IMGT annotation: the paradigm of the bovine Bos taurus T cell receptor (TRG) locus
T cell receptors (TR) are essential components of the adaptive immune system, typically classified into αβ and γδ types. In humans and mice, αβ T cells predominate, with γδ T cells comprising only a small percent...
Citation: BMC Genomics 2025 26:809