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Commits on Dec 9, 2025

• Fixes for tests and github actions

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  evolarjun

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  c01eeb3

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Commits on Dec 6, 2025

• Fixes for tests necessitated by new test files (#176)

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  evolarjun

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  83e1836

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Commits on Dec 5, 2025

• Bug fix release 4.2.5

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  evolarjun

  committed
  81f509d

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• Add in file missing from test

  evolarjun

  committed
  170fc9a

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• Added tests for POINT_DISRUPT

  evolarjun

  committed
  2cd56e8

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• PD-5507 Add AMRProt-susceptible.fa to amrfinder_update.cpp

  

  Vyacheslav Brover

  committed
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Commits on Dec 4, 2025

• Add timeout to GitHub actions

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  evolarjun

  committed
  501b642

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• Merge for release 4.2.4

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  evolarjun

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Commits on Dec 2, 2025

• stop d/l of expected for test_database_update.sh

  evolarjun

  committed
  de23a39

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• Merge pull request #171 from ncbi/dev_cafromenv

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  vbrover

  authored
  c7b0f61

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• Use CURL_CA_BUNDLE env var for CA file PD-5495

  evolarjun

  committed
  e3026d7

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Commits on Nov 13, 2025

• PD-5469 Make error messages of amrfinder_update human readable

  

  Vyacheslav Brover

  committed
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Commits on Sep 26, 2025

• Update tests for latest version

  evolarjun

  committed
  1aa409c

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Commits on Sep 25, 2025

• PD-5395 cirA_A169AERSPHNFPKATer becomes cirA_A169insTer10, ompK35_N...Y82del becomes ompK35_N82_Y310del

  

  Vyacheslav Brover

  committed
  c15732e

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Commits on Sep 24, 2025

• PD-5445 Element symbols and element names are checked not to be "NA" in the report file

  

  Vyacheslav Brover

  committed
  412133b

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Commits on Sep 22, 2025

• PD-5423 stop codon amino acid is changed: STOP -> Ter

  

  Vyacheslav Brover

  committed
  7a7c0a6

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Commits on Sep 12, 2025

• PD-5427 [partial] fusion protein BLAST hit should be extended by >= 20 aa over a non-fusion protein hit to override it

  

  Vyacheslav Brover

  committed
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Commits on Aug 19, 2025

• PD-5427 bug: partial bifunctional hits were reported by 2 hits

  

  Vyacheslav Brover

  committed
  3368f32

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• JIRA PD-5426 bug in reporting strand by dna_mutation.cpp

  

  Vyacheslav Brover

  committed
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Commits on Aug 11, 2025

• StxTyper to remove stop codon from % id PD-5306

  evolarjun

  committed
  3232f23

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Commits on Jul 22, 2025

• PD-5394 only first gene disruption mutation is reported

  

  Vyacheslav Brover

  committed
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Commits on Jul 16, 2025

• PD-5393 subtype POINT should be preferred over POINT_DISRUPT; StxTyper ver. 1.0.45 of branch 'dev'

  

  Vyacheslav Brover

  committed
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Commits on Jun 21, 2025

• PD-5379 set subtype to POINT_DISRUPT for broken genes

  

  Vyacheslav Brover

  committed
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Commits on Jun 11, 2025

• PD-5370 bug in reporting broken genes without stop codons in negative strand

  

  Vyacheslav Brover

  committed
  ea6a43d

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Commits on Jun 9, 2025

• PD-5363 bug in long insertions in broken genes: undetected stop codon; PD-5364 remove parallism in blastn due to SB-4472

  

  Vyacheslav Brover

  committed
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Commits on Jun 4, 2025

• PD-5358 amrfinder_index allows empty gpipe_taxgroup in taxgroup.tsv

  

  Vyacheslav Brover

  committed
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Commits on May 20, 2025

• PD-5322 fixing stx commit

  

  Vyacheslav Brover

  committed
  6e7f3f8

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Commits on May 19, 2025

• PD-5322 Taxgroup can have no GPipe organism

  

  Vyacheslav Brover

  committed
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• PD-5329 Broken genes

  

  Vyacheslav Brover

  committed
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Commits on May 12, 2025

• Merge pull request #165 from ncbi/dev handle new PGAP output format

  evolarjun

  authored
  4d9d45d

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• PD-5318 --pgap can have a standard GFF format

  

  Vyacheslav Brover

  committed
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Commits on Apr 21, 2025

• Modification of Makefile because of build issues

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  evolarjun

  committed
  ec2af5d

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Commits on Apr 17, 2025

• Merge branch dev for version 4.0.22

  evolarjun

  committed
  408ed6d

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• Update to release version of StxTyper 1.0.42

  evolarjun

  committed
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• Merge remote-tracking branch 'origin/dev' into dev

  evolarjun

  committed
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