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Commits on May 5, 2024

• changed diversity input check (#520)

  ndegunst

  authored
  aaa55f2

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• Initialise mediation functions (#503)

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  3 peopleauthored
  21a74d1

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Commits on Apr 30, 2024

• bump x.y.z version to odd y following creation of RELEASE_3_19 branch

  jwokaty

  committed
  f257732

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• bump x.y.z version to even y prior to creation of RELEASE_3_19 branch

  jwokaty

  committed
  38dad1b

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Commits on Apr 26, 2024

• Update manual pages (#537)

  TuomasBorman

  authored
  1b6f55b

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• Add explanation for agglomerateByPrevalence (#509)

  theotimeee

  authored
  47378e3

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Commits on Apr 25, 2024

• Rename estimateDivergence to addDivergence (#531)

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  theotimeee

  and

  TuomasBorman

  authored
  a537731

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Commits on Apr 24, 2024

• deprecate plotNMDS (#517)

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  theotimeee

  and

  TuomasBorman

  authored
  1adf43c

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• importMetaphlan: bugfixes (#530)

  TuomasBorman

  authored
  9c1902e

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• Deprecate functions *_join (#515)

  theotimeee

  authored
  88947bb

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• correct typo 'importBiom' to 'importBIOM' (#525)

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  theotimeee

  and

  antagomir

  authored
  1ab0998

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Commits on Apr 19, 2024

• deprecate subset* functions (#518)

  theotimeee

  authored
  1b84bc5

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Commits on Apr 18, 2024

• Revert "Issue 334 estimate diversity" (#516)

  TuomasBorman

  authored
  58cc49b

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Commits on Apr 17, 2024

• Issue 334 estimate diversity (#514)

  ndegunst

  authored
  c96a4e5

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Commits on Apr 16, 2024

• Explain difference between phylogenetic and hierarchy trees (#510)

  theotimeee

  authored
  f0d3436

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Commits on Apr 15, 2024

• rename importers to standardize "import" terminology (#505)

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  theotimeee

  and

  TuomasBorman

  authored
  b7dd1c2

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Commits on Apr 10, 2024

• Rename cluster to addCluster (#502)

  theotimeee

  authored
  1d01162

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Commits on Apr 3, 2024

• taxonomyranks (#501)

  ake123

  authored
  32d85c6

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• Start using rworkflows (#508)

  TuomasBorman

  authored
  266637d

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• Fix error, notes, and warning based on BiocCheck() (#469)

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  4 peopleauthored
  889d7fb

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Commits on Mar 14, 2024

• getExperimentCrossCorrelation and SampleMap (#504)

  TuomasBorman

  authored
  ecd661f

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Commits on Mar 5, 2024

• getPrevalence, NA values (#486)

  TuomasBorman

  authored
  aa1d488

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• cluster: fixes (#477)

  TuomasBorman

  authored
  6a356cd

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Commits on Mar 4, 2024

• Add pages to pkgdown (#500)

  TuomasBorman

  authored
  5f18f82

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• Deprecate taxonomyTree and addTaxonomyTree (#496)

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  3 peopleauthored
  45544f3

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Commits on Mar 1, 2024

• loadFromMetaphlan: support taxonomy-named column (#499)

  TuomasBorman

  authored
  1269d9c

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Commits on Feb 28, 2024

• New arguments for perSampleDominantFeatures (#479)

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  himmil

  and

  antagomir

  authored
  d159f74

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Commits on Feb 26, 2024

• Fix splitOn bug (#495)

  theotimeee

  authored
  be6bcbd

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Commits on Feb 21, 2024

• agglomerateByRank fix: empty ranks (#493)

  TuomasBorman

  authored
  97b01b6

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Commits on Feb 19, 2024

• Clarify pseudocount argument (#490)

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  artur-sannikov

  and

  artur_sannikov

  authored
  61f2d16

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Commits on Feb 13, 2024

• agglomerateByRank: agglomerate tree fix (#487)

  TuomasBorman

  authored
  4d1a093

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Commits on Jan 30, 2024

• loadFromMetaphlan: support for strain level (#485)

  TuomasBorman

  authored
  2d0c38d

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Commits on Nov 28, 2023

• #473 (#475)

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  himmil

  and

  antagomir

  authored
  dc1e5aa

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Commits on Oct 27, 2023

• Fix mergeSEs (#472)

  TuomasBorman

  authored
  20565bb

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• Sync

  Show description for 3457c3b
  TuomasBorman

  committed
  3457c3b

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