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Cheers developers!
My mate @catroro spotted an easy addition to the compartment calling module.
We noticed that albeit a genome phasing track is computed at
hic/modules/local/cooltools/eigscis.nf
Line 28 in fe4ac65
| cooltools genome gc genome_bins.txt ${fasta} > genome_gc.txt |
hic/modules/local/cooltools/eigscis.nf
Line 29 in fe4ac65
| cooltools eigs-cis ${args} -o ${prefix}_compartments ${cool} |
--phasing-track genome_gc.txt to the function call would help quite a bit the interpretation of compartments into active/inactive.
Thanks!
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