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Add --phasing-track to cooltools compartment calling #232

@GuidoBarzaghi

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@GuidoBarzaghi

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Cheers developers!

My mate @catroro spotted an easy addition to the compartment calling module.

We noticed that albeit a genome phasing track is computed at

cooltools genome gc genome_bins.txt ${fasta} > genome_gc.txt
the output file is not passed to the eigs-cis function at
cooltools eigs-cis ${args} -o ${prefix}_compartments ${cool}
Adding the argument --phasing-track genome_gc.txt to the function call would help quite a bit the interpretation of compartments into active/inactive.

Thanks!

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