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    14 repositories

    • jbrowse-registry

      Public
      JBrowse Plugin Registry
      HTML
      •
      BSD 2-Clause "Simplified" License
      •8•0•0•10•Updated Dec 6, 2025Dec 6, 2025

    • SComatic

      Public
      A tool for detecting somatic variants in single cell data
      Python
      •
      Other
      •34•1•0•0•Updated Sep 13, 2025Sep 13, 2025

    • CRISPResso2

      Public
      Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
      Python
      •
      Other
      •110•0•0•0•Updated Sep 5, 2025Sep 5, 2025

    • wgbs_tools

      Public
      tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
      Python
      •
      Other
      •52•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • lowinputtrees

      Public
      Python
      •
      MIT License
      •2•0•1•0•Updated Oct 30, 2024Oct 30, 2024

    • cgpBpipe

      Public
      local repo of bpipe that handles LSF array jobs
      Groovy
      •2•0•0•0•Updated Mar 24, 2023Mar 24, 2023

    • battenberg

      Public
      Battenberg R package for subclonal copynumber estimation
      R
      •
      GNU Affero General Public License v3.0
      •60•1•0•1•Updated Oct 8, 2020Oct 8, 2020

    • gossamer

      Public
      Gossamer bioinformatics suite
      C++
      •
      Other
      •19•2•0•0•Updated May 6, 2020May 6, 2020

    • indelsClassification

      Public
      R function for the classification of small insertions and deletions for mutational signature analysis
      HTML
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Jul 11, 2019Jul 11, 2019

    • linasm

      Public
      fast and safe base library for x86-64 Linux SSE4.2 in asm (non-official patches)
      Assembly
      •
      GNU Lesser General Public License v3.0
      •3•0•0•0•Updated Jun 6, 2019Jun 6, 2019

    • wr

      Public
      High performance Workflow Runner
      Go
      •
      GNU General Public License v3.0
      •12•0•0•0•Updated Nov 6, 2018Nov 6, 2018

    • indrops

      Public
      Pipeline for processing inDrops sequencing data
      Python
      •44•0•0•0•Updated Aug 7, 2018Aug 7, 2018

    • tophat

      Public
      Spliced read mapper for RNA-Seq
      C++
      •
      Boost Software License 1.0
      •46•0•0•0•Updated Jan 20, 2017Jan 20, 2017

    • RSeQC

      Public
      fork of RSeQC python RNAseq metrics suit of tools
      Python
      •20•0•0•0•Updated Jan 11, 2017Jan 11, 2017