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Commits on Jan 23, 2026

• Fix x and y calculations in StatTadUnder for accurate TAD boundary visualization

  mhjiang97

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• Add StatTadUnder and geom_tad_under functions for TAD boundary visualization

  mhjiang97

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• Comment out minimum y-value calculation in StatHicUnder for debugging purposes

  mhjiang97

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Commits on Jan 14, 2026

• Refactor namespace checks in gene annotation functions for improved readability

  mhjiang97

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Commits on Jan 13, 2026

• Add minimum score calculation to StatTrack for improved y-axis scaling

  mhjiang97

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• Fix start and end calculations in grs2Gis function for accurate genomic range handling

  mhjiang97

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• Remove unused data_range argument in StatTrack function to streamline input validation

  mhjiang97

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Commits on Jan 7, 2026

• Enhance memory retrieval logic for different operating systems and add boundary row generation for intra-chromosomal interactions in getBreaksLabels function

  mhjiang97

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• Update select method documentation and enhance bin filtering logic for chromosome-specific indices

  mhjiang97

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• Add 'type' aesthetic to GeomHic and filter for boundary in drawing logic

  mhjiang97

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Commits on Dec 29, 2025

• Add bin filtering option to select method and update documentation

  mhjiang97

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Commits on Dec 18, 2025

• Add star history and Repobeats analytics images to README for enhanced visibility

  mhjiang97

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Commits on Dec 17, 2025

• Update README.md to enhance visibility with additional badges and contributor information

  mhjiang97

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Commits on Dec 15, 2025

• Update .Rd files

  mhjiang97

  committed
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• Refactor NAMESPACE to streamline exports and imports, removing unused elements and enhancing clarity

  mhjiang97

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• Bump version to 0.2.1 and update package dependencies in DESCRIPTION

  mhjiang97

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• Enhance S4 method system for hypergraphs and improve documentation across user-facing functions

  mhjiang97

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• Refactor vignette code for clarity and consistency in depth and hypergraph analyses

  mhjiang97

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• Enhance ChromatinContacts functionality and documentation

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  mhjiang97

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• Enhance geom_loop, geom_tad, and geom_track functionalities

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  mhjiang97

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• Refactor hypergraph functionality and add selection and tidying methods

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  mhjiang97

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Commits on Dec 3, 2025

• Refactor function exports and documentation for chunked resolution and coverage calculations

  mhjiang97

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Commits on Dec 2, 2025

• Add author information to vignette header for proper attribution

  mhjiang97

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• Update vignette authors and increase table of contents depth for improved navigation

  mhjiang97

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• Fix documentation links in index.md to ensure correct navigation to articles

  mhjiang97

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• Update NEWS, README, and pkgdown documentation for version 0.2.0 with new features, performance improvements, and enhanced installation instructions

  mhjiang97

  committed
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• Update vignette package loading to include gghic for improved functionality

  mhjiang97

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• Update README to reorder features and simplify installation instructions

  mhjiang97

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• Update resolution-depth documentation to include caching functionality and parameters

  mhjiang97

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• Refactor depth vignette to improve caching explanations and file reading approaches

  mhjiang97

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• Export readPairsCache function in NAMESPACE

  mhjiang97

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• Update .gitignore to include C and RcppExports output files

  mhjiang97

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• Add Makevars file with compiler flags and library dependencies

  mhjiang97

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• Implement resolution depth calculation in C with data frame output

  mhjiang97

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• Add pairs I/O functionality with filtering and caching support

  mhjiang97

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