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Commits on Dec 3, 2025

• Merge pull request #624 from pangenome/free-colors

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  AndreaGuarracino

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Commits on Nov 24, 2025

• Add clustering option for path visualization based on pairwise similarity

  AndreaGuarracino

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  c4c1396

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• Merge pull request #623 from pangenome/free-colors

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  AndreaGuarracino

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• Add support for per-path RGB colors in visualization

  AndreaGuarracino

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Commits on Nov 15, 2025

• Add ggviz.R script for visualizing pangenome coverage and node lengths

  AndreaGuarracino

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Commits on Oct 23, 2025

• Add highlight feature for specified nodes in visualization

  AndreaGuarracino

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Commits on Jul 24, 2025

• Merge pull request #614 from pangenome/odgi_similarity_parallelized

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  AndreaGuarracino

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• Refactor thread-local storage management to optimize memory usage and improve performance in similarity computation

  AndreaGuarracino

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Commits on Jul 23, 2025

• Reduce maximum thread-local storage maps from 4 to 2 for improved memory efficiency

  AndreaGuarracino

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• Adjust output precision in chunked buffering to improve performance and reduce memory usage

  AndreaGuarracino

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• Implement chunked buffering for output to optimize speed and memory usage in similarity computation

  AndreaGuarracino

  committed
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• Optimize thread-local storage usage in similarity computation for improved performance and reduced memory footprint

  AndreaGuarracino

  committed
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• tweaks

  AndreaGuarracino

  committed
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• Refactor progress meter initialization to improve clarity and maintainability

  AndreaGuarracino

  committed
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• Optimize parallel processing in similarity computation using thread-local storage

  AndreaGuarracino

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Commits on Jul 2, 2025

• Merge pull request #612 from hlakshmidevi10/macos-fixes

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  AndreaGuarracino

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Commits on Jun 30, 2025

• fix typo in CMakeLists

  

  Harieasswar Lakshmidevi

  committed
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• added checks for apple sillicon and cmake4.0+ version

  

  Harieasswar Lakshmidevi

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Commits on May 2, 2025

• Merge pull request #608 from pangenome/odgi_stats_header

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  AndreaGuarracino

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• Add header to output for sample counts in stats command

  AndreaGuarracino

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Commits on Apr 23, 2025

• Merge pull request #605 from pangenome/similarity_all

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  AndreaGuarracino

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• Add option to emit all pairs of paths/groups in similarity computation

  AndreaGuarracino

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Commits on Apr 7, 2025

• Add chr22 CYP2D6 BED file with protein coding and pseudogene annotations [skip ci]

  AndreaGuarracino

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Commits on Feb 12, 2025

• Merge pull request #602 from pangenome/AndreaGuarracino-patch-1

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  AndreaGuarracino

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• Update build_and_test_on_push.yml

  AndreaGuarracino

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• Update build_and_test_on_push.yml

  AndreaGuarracino

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• Update build_and_test_on_push.yml

  AndreaGuarracino

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• Update build_and_test_on_push.yml

  AndreaGuarracino

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• Update build_and_test_on_push.yml

  AndreaGuarracino

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• Update build_and_test_on_push.yml

  AndreaGuarracino

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• update GitHub Actions workflow to use ubuntu-latest

  AndreaGuarracino

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Commits on Jan 28, 2025

• Merge pull request #601 from pangenome/fix_masked_similarity

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  AndreaGuarracino

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• consider the mask when filling bp_length

  AndreaGuarracino

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Commits on Jan 10, 2025

• Merge pull request #600 from pangenome/odgi_similarity_masked

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  AndreaGuarracino

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Commits on Nov 29, 2024

• refactor: Make node mask optional in similarity command

  AndreaGuarracino

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