biologic
A genome visualization python package for comparative genomics
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Interactive network visualization in Python and Dash, powered by Cytoscape.js
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Python library to facilitate genome assembly, annotation, and comparative genomics
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
A full spaCy pipeline and models for scientific/biomedical documents.
This repository contains Python implementations of bioinformatics algorithms, including several that are featured in the Rosalind problem set.
Official git repository for Biopython (originally converted from CVS)
A phylogeny dating method using least-squares algorithms and criteria
A versatile pairwise aligner for genomic and spliced nucleotide sequences
A tool for exploring large trees in the browser
Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
A list of interesting genome browser and genome visualization programs
A client-side WebAssembly pipeline for viral molecular epidemiology
A comprehensive library for computational molecular biology
Example of SGTK application for E.coli dataset:
A common lisp library for representing and processing biological data such as sequences, genes, proteins, etc...
An Introduction to Applied Bioinformatics, 2nd Edition
A high-performance, zero-overhead, extensible Python compiler with built-in NumPy support
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
Biological sequences for the julia language