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Commits on Dec 5, 2025

• 'inputs/ramp': final changes to the ramp sqlite code to make it use the generic sqlite downloader

  TobyL98

  committed
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Commits on Dec 4, 2025

• change to ensure that inputs/ramp uses the _sqlite gnereic downloader correctly

  TobyL98

  committed
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• 'inputs.chembl._sqlite': created a function to download the raw chembl sqlite data

  TobyL98

  committed
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Commits on Dec 2, 2025

• 'formats.sqlite': minor changes mainly to type annotations to make the code more readable

  TobyL98

  committed
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• 'formats/sqlite': minor code improvements to the in memory subset database function and extratcting SQL tables

  TobyL98

  committed
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Commits on Dec 1, 2025

• chnaged the chembl and ramp SQLite downloads to be included in a general SQLite downloader

  TobyL98

  committed
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Commits on Nov 14, 2025

• 'chemb': allowed long download time

  TobyL98

  committed
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• Merge branch 'master' of github.com:saezlab/pypath

  deeenes

  committed
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• moved general `sqlite` support functions from `inputs.ramp` to `formats.sqlite`

  deeenes

  committed
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• 'chembl': minor formatting changes to _sqlite

  TobyL98

  committed
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• missing `chembl._common`

  deeenes

  committed
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• `inputs.chembl`: simplified sqlite access

  deeenes

  committed
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• 'chembl': minor changes to SQLite download

  TobyL98

  committed
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Commits on Nov 11, 2025

• Merge branch 'master' of github.com:saezlab/pypath

  TobyL98

  committed
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• 'pypath/inputs/ChEMBL': added code that downloads ChEMBL data from SQLite

  TobyL98

  committed
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Commits on Nov 5, 2025

• remove two lines are redundant

  

  Priscilla Bai

  committed
  c6ceb71

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• fix bug (sort empty protein location) in MRClinks db

  

  Priscilla Bai

  committed
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• fix mrclinksdb bug

  

  Priscilla Bai

  committed
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• fix MRClinksdb bug

  

  Priscilla Bai

  committed
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Commits on Oct 29, 2025

• TCDB add species screening for COSMOS

  

  Priscilla Bai

  authored and

  Priscilla Bai

  committed
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Commits on Oct 22, 2025

• Merge branch 'master' of github.com:saezlab/pypath

  

  Priscilla Bai

  committed
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• add rhea url

  

  Priscilla Bai

  committed
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Commits on Oct 19, 2025

• 'pypath/inputs/chembl/': changes to allow to download using SQLite rather than the Chembl API

  TobyL98

  committed
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Commits on Oct 16, 2025

• 'pypath/inputs/guidetopharma/': chnages to include the GtP ligand ID and target ID in final records

  TobyL98

  committed
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• 'pypath/inputs/bindingdb/': changed uniprot mapping into interactions to correctly get uniprot IDs

  TobyL98

  committed
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• extended mitab.py (included signor and intact)

  jonsch1

  committed
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Commits on Oct 2, 2025

• added psimi ontology

  jonsch1

  committed
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Commits on Sep 11, 2025

• 'pypath.inputs.ramp._sqlite': minor changes to SQL query in ramp_omnipathmetabo function

  TobyL98

  committed
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Commits on Sep 9, 2025

• 'pypath.inputs.ramp': added SELECT DISTINCT to ensure no duplicates in ramp_omnipathmetabo SQL query

  TobyL98

  committed
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Commits on Sep 8, 2025

• 'pypath/inputs/ramp/_sqlite.py': minor changes to ramp_omnipathmetabo SQL query

  TobyL98

  committed
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• updates on write csv function

  

  Priscilla Bai

  committed
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• Merge branch 'master' of github.com:saezlab/pypath

  TobyL98

  committed
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• 'pypath/inputs/ramp': minor change to cast masses to numeric types in the ramp_omnipathmetabo function

  TobyL98

  committed
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• add write csv function

  

  Priscilla Bai

  committed
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Commits on Sep 5, 2025

• Merge branch 'master' of github.com:saezlab/pypath

  TobyL98

  committed
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