Error in metaeuk taxtocontig: "Missing key 8781 in tax result" #94
Description
My data is metagenomic sewage samples, and I encountered similar issues during the taxtocontig step for each sample. Could you please help me with this?
The process fails during the aggregatetaxweights step with the message:
Missing key 8781 in tax result
Error: aggregatetaxweights died
Command used:
metaeuk taxtocontig temp_dir/latest/contigs D0B7_predsResults.codon.fas D0B7_predsResults.headersMap.tsv /mnt/data4/songjing/database/NR/NR_db D0B7_taxResult tax_tmpDir --majority 0.5 --tax-lineage 1 --lca-mode 2
My command to build the database:
metaeuk databases NR NR_db NRtmpDir
My full taxtocontig log is as follows:
taxtocontig D0B7/temp_dir/latest/contigs D0B7/D0B7_predsResults.codon.fas D0B7/D0B7_predsResults.headersMap.tsv /mnt/data4/songjing/database/NR/NR_db D0B7/D0B7_taxResult D0B7/tax_tmpDir --majority 0.5 --tax-lineage 1 --lca-mode 2
MMseqs Version: 7.bba0d80
ORF filter 0
ORF filter e-value 100
ORF filter sensitivity 2
LCA mode 2
Taxonomy output mode 2
Majority threshold 0.5
Vote mode 1
LCA ranks
Column with taxonomic lineage 1
Compressed 0
Threads 240
Verbosity 3
Taxon blacklist 12908:unclassified sequences,28384:other sequences
Substitution matrix aa:blosum62.out,nucl:nucleotide.out
Add backtrace false
Alignment mode 0
Alignment mode 0
Allow wrapped scoring false
E-value threshold 0.001
Seq. id. threshold 0
Min alignment length 0
Seq. id. mode 0
Alternative alignments 0
Coverage threshold 0
Coverage mode 0
Max sequence length 65535
Compositional bias 1
Compositional bias 1
Max reject 2147483647
Max accept 2147483647
Include identical seq. id. false
Preload mode 0
Pseudo count a substitution:1.100,context:1.400
Pseudo count b substitution:4.100,context:5.800
Score bias 0
Realign hits false
Realign score bias -0.2
Realign max seqs 2147483647
Correlation score weight 0
Gap open cost aa:11,nucl:5
Gap extension cost aa:1,nucl:2
Zdrop 40
Seed substitution matrix aa:VTML80.out,nucl:nucleotide.out
Sensitivity 4
k-mer length 0
Target search mode 0
k-score seq:2147483647,prof:2147483647
Alphabet size aa:21,nucl:5
Max results per query 300
Split database 0
Split mode 2
Split memory limit 0
Diagonal scoring true
Exact k-mer matching 0
Mask residues 1
Mask residues probability 0.9
Mask lower case residues 0
Minimum diagonal score 15
Selected taxa
Spaced k-mers 1
Spaced k-mer pattern
Local temporary path
Rescore mode 0
Remove hits by seq. id. and coverage false
Sort results 0
Mask profile 1
Profile E-value threshold 0.001
Global sequence weighting false
Allow deletions false
Filter MSA 1
Use filter only at N seqs 0
Maximum seq. id. threshold 0.9
Minimum seq. id. 0.0
Minimum score per column -20
Minimum coverage 0
Select N most diverse seqs 1000
Pseudo count mode 0
Min codons in orf 30
Max codons in length 32734
Max orf gaps 2147483647
Contig start mode 2
Contig end mode 2
Orf start mode 1
Forward frames 1,2,3
Reverse frames 1,2,3
Translation table 1
Translate orf 0
Use all table starts false
Offset of numeric ids 0
Create lookup 0
Add orf stop false
Overlap between sequences 0
Sequence split mode 1
Header split mode 0
Chain overlapping alignments 0
Merge query 1
Search type 0
Prefilter mode 0
Exhaustive search mode false
Filter results during exhaustive search 0
Strand selection 1
LCA search mode false
Disk space limit 0
MPI runner
Force restart with latest tmp false
Remove temporary files false
taxonomy D0B7/tax_tmpDir/9964656498112368933/preds /mnt/data4/songjing/database/NR/NR_db D0B7/tax_tmpDir/9964656498112368933/tax_per_pred D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy --orf-filter 0 --orf-filter-e 100 --orf-filter-s 2 --lca-mode 2 --tax-output-mode 2 --majority 0.5 --vote-mode 1 --tax-lineage 1 --compressed 0 --threads 240 -v 3 --blacklist '12908:unclassified sequences,28384:other sequences' --sub-mat 'aa:blosum62.out,nucl:nucleotide.out' -a 0 --alignment-mode 0 --alignment-output-mode 0 --wrapped-scoring 0 -e 0.001 --min-seq-id 0 --min-aln-len 0 --seq-id-mode 0 --alt-ali 0 -c 0 --cov-mode 0 --max-seq-len 65535 --comp-bias-corr 1 --comp-bias-corr-scale 1 --max-rejected 2147483647 --max-accept 2147483647 --add-self-matches 0 --db-load-mode 0 --pca substitution:1.100,context:1.400 --pcb substitution:4.100,context:5.800 --score-bias 0 --realign 0 --realign-score-bias -0.2 --realign-max-seqs 2147483647 --corr-score-weight 0 --gap-open aa:11,nucl:5 --gap-extend aa:1,nucl:2 --zdrop 40 --seed-sub-mat 'aa:VTML80.out,nucl:nucleotide.out' -s 4 -k 0 --target-search-mode 0 --k-score seq:2147483647,prof:2147483647 --alph-size aa:21,nucl:5 --max-seqs 300 --split 0 --split-mode 2 --split-memory-limit 0 --diag-score 1 --exact-kmer-matching 0 --mask 1 --mask-prob 0.9 --mask-lower-case 0 --min-ungapped-score 15 --spaced-kmer-mode 1 --rescore-mode 0 --filter-hits 0 --sort-results 0 --mask-profile 1 --e-profile 0.001 --wg 0 --allow-deletion 0 --filter-msa 1 --filter-min-enable 0 --max-seq-id 0.9 --qid '0.0' --qsc -20 --cov 0 --diff 1000 --pseudo-cnt-mode 0 --min-length 30 --max-length 32734 --max-gaps 2147483647 --contig-start-mode 2 --contig-end-mode 2 --orf-start-mode 1 --forward-frames 1,2,3 --reverse-frames 1,2,3 --translation-table 1 --translate 0 --use-all-table-starts 0 --id-offset 0 --create-lookup 0 --add-orf-stop 0 --sequence-overlap 0 --sequence-split-mode 1 --headers-split-mode 0 --chain-alignments 0 --merge-query 1 --search-type 0 --prefilter-mode 0 --exhaustive-search 0 --exhaustive-search-filter 0 --strand 1 --lca-search 0 --disk-space-limit 0 --force-reuse 0 --remove-tmp-files 0
2bLCA was replaced by approximate 2bLCA
taxonomy D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_aa /mnt/data4/songjing/database/NR/NR_db D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_tax D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/tmp_taxonomy --orf-filter 0 --orf-filter-e 100 --orf-filter-s 2 --lca-mode 3 --tax-output-mode 2 --majority 0.5 --vote-mode 1 --tax-lineage 0 --compressed 0 --threads 240 -v 3 --blacklist '12908:unclassified sequences,28384:other sequences' --sub-mat 'aa:blosum62.out,nucl:nucleotide.out' -a 0 --alignment-mode 0 --alignment-output-mode 0 --wrapped-scoring 0 -e 0.001 --min-seq-id 0 --min-aln-len 0 --seq-id-mode 0 --alt-ali 0 -c 0 --cov-mode 0 --max-seq-len 65535 --comp-bias-corr 1 --comp-bias-corr-scale 1 --max-rejected 2147483647 --max-accept 2147483647 --add-self-matches 0 --db-load-mode 0 --pca substitution:1.100,context:1.400 --pcb substitution:4.100,context:5.800 --score-bias 0 --realign 0 --realign-score-bias -0.2 --realign-max-seqs 2147483647 --corr-score-weight 0 --gap-open aa:11,nucl:5 --gap-extend aa:1,nucl:2 --zdrop 40 --seed-sub-mat 'aa:VTML80.out,nucl:nucleotide.out' -s 4 -k 0 --target-search-mode 0 --k-score seq:2147483647,prof:2147483647 --alph-size aa:21,nucl:5 --max-seqs 300 --split 0 --split-mode 2 --split-memory-limit 0 --diag-score 1 --exact-kmer-matching 0 --mask 1 --mask-prob 0.9 --mask-lower-case 0 --min-ungapped-score 15 --spaced-kmer-mode 1 --rescore-mode 0 --filter-hits 0 --sort-results 0 --mask-profile 1 --e-profile 0.001 --wg 0 --allow-deletion 0 --filter-msa 1 --filter-min-enable 0 --max-seq-id 0.9 --qid '0.0' --qsc -20 --cov 0 --diff 1000 --pseudo-cnt-mode 0 --min-length 30 --max-length 32734 --max-gaps 2147483647 --contig-start-mode 2 --contig-end-mode 2 --orf-start-mode 1 --forward-frames 1,2,3 --reverse-frames 1,2,3 --translation-table 1 --translate 1 --use-all-table-starts 0 --id-offset 0 --create-lookup 0 --add-orf-stop 0 --sequence-overlap 0 --sequence-split-mode 1 --headers-split-mode 0 --chain-alignments 0 --merge-query 1 --search-type 0 --prefilter-mode 0 --exhaustive-search 0 --exhaustive-search-filter 0 --strand 1 --lca-search 0 --disk-space-limit 0 --force-reuse 0 --remove-tmp-files 0
search D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_aa /mnt/data4/songjing/database/NR/NR_db D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/tmp_taxonomy/4499761789220285412/first D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/tmp_taxonomy/4499761789220285412/tmp_hsp1 --sub-mat 'aa:blosum62.out,nucl:nucleotide.out' -a 0 --alignment-mode 0 --alignment-output-mode 0 --wrapped-scoring 0 -e 0.001 --min-seq-id 0 --min-aln-len 0 --seq-id-mode 0 --alt-ali 0 -c 0 --cov-mode 0 --max-seq-len 65535 --comp-bias-corr 1 --comp-bias-corr-scale 1 --max-rejected 2147483647 --max-accept 2147483647 --add-self-matches 0 --db-load-mode 0 --pca substitution:1.100,context:1.400 --pcb substitution:4.100,context:5.800 --score-bias 0 --realign 0 --realign-score-bias -0.2 --realign-max-seqs 2147483647 --corr-score-weight 0 --gap-open aa:11,nucl:5 --gap-extend aa:1,nucl:2 --zdrop 40 --threads 240 --compressed 0 -v 3 --seed-sub-mat 'aa:VTML80.out,nucl:nucleotide.out' -s 4 -k 0 --target-search-mode 0 --k-score seq:2147483647,prof:2147483647 --alph-size aa:21,nucl:5 --max-seqs 300 --split 0 --split-mode 2 --split-memory-limit 0 --diag-score 1 --exact-kmer-matching 0 --mask 1 --mask-prob 0.9 --mask-lower-case 0 --min-ungapped-score 15 --spaced-kmer-mode 1 --rescore-mode 0 --filter-hits 0 --sort-results 0 --mask-profile 1 --e-profile 0.001 --wg 0 --allow-deletion 0 --filter-msa 1 --filter-min-enable 0 --max-seq-id 0.9 --qid '0.0' --qsc -20 --cov 0 --diff 1000 --pseudo-cnt-mode 0 --min-length 30 --max-length 32734 --max-gaps 2147483647 --contig-start-mode 2 --contig-end-mode 2 --orf-start-mode 1 --forward-frames 1,2,3 --reverse-frames 1,2,3 --translation-table 1 --translate 1 --use-all-table-starts 0 --id-offset 0 --create-lookup 0 --add-orf-stop 0 --sequence-overlap 0 --sequence-split-mode 1 --headers-split-mode 0 --chain-alignments 0 --merge-query 1 --search-type 0 --prefilter-mode 0 --exhaustive-search 0 --exhaustive-search-filter 0 --strand 1 --lca-search 1 --disk-space-limit 0 --force-reuse 0 --remove-tmp-files 0
prefilter D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_aa /mnt/data4/songjing/database/NR/NR_db D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/tmp_taxonomy/4499761789220285412/tmp_hsp1/15593029152791307246/pref_0 --sub-mat 'aa:blosum62.out,nucl:nucleotide.out' --seed-sub-mat 'aa:VTML80.out,nucl:nucleotide.out' -k 0 --target-search-mode 0 --k-score seq:2147483647,prof:2147483647 --alph-size aa:21,nucl:5 --max-seq-len 65535 --max-seqs 300 --split 0 --split-mode 2 --split-memory-limit 0 -c 0 --cov-mode 0 --comp-bias-corr 1 --comp-bias-corr-scale 1 --diag-score 1 --exact-kmer-matching 0 --mask 1 --mask-prob 0.9 --mask-lower-case 0 --min-ungapped-score 15 --add-self-matches 0 --spaced-kmer-mode 1 --db-load-mode 0 --pca substitution:1.100,context:1.400 --pcb substitution:4.100,context:5.800 --threads 240 --compressed 0 -v 3 -s 4.0
Query database size: 83353 type: Aminoacid
Target split mode. Searching through 28 splits
Estimated memory consumption: 391G
Target database size: 707028945 type: Aminoacid
Process prefiltering step 1 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.26M 12s 129ms
Index table: Masked residues: 143134089
Index table: fill
[=================================================================] 25.26M 24s 400ms
Index statistics
Entries: 9227693597
DB size: 62566 MB
Avg k-mer size: 7.209136
Top 10 k-mers
FLLLLLA 118775
ATQAYAV 118650
CYGPSYQ 118501
KLKLNKS 118458
LAYGSGV 118446
AVNDSVL 118357
ACNSPVY 118345
GSLGSSV 118277
TFVACGS 118227
IAESSSY 118226
Time for index table init: 0h 0m 46s 626ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 1 of 28)
Query db start 1 to 83353
Target db start 1 to 25257222
[=================================================================] 83.35K 4s 269ms
327.204506 k-mers per position
95924 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
259 sequences with 0 size result lists
Time for merging to pref_0_tmp_0: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_0_tmp: 0h 0m 0s 35ms
Process prefiltering step 2 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.25M 12s 851ms
Index table: Masked residues: 143315425
Index table: fill
[=================================================================] 25.25M 24s 702ms
Index statistics
Entries: 9227984601
DB size: 62568 MB
Avg k-mer size: 7.209363
Top 10 k-mers
FLLLLLA 119520
ATQAYAV 119332
KLKLNKS 119187
LAYGSGV 119180
ACNSPVY 119068
AFKVSSV 119032
HALLFPS 118981
KDTAFMV 118979
EAEMVLS 118924
DTEFEVS 118924
Time for index table init: 0h 0m 47s 643ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 2 of 28)
Query db start 1 to 83353
Target db start 25257223 to 50507505
[=================================================================] 83.35K 4s 309ms
327.204506 k-mers per position
95939 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
242 sequences with 0 size result lists
Time for merging to pref_0_tmp_1: 0h 0m 0s 19ms
Time for merging to pref_0_tmp_1_tmp: 0h 0m 0s 34ms
Process prefiltering step 3 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.25M 12s 824ms
Index table: Masked residues: 142902174
Index table: fill
[=================================================================] 25.25M 25s 211ms
Index statistics
Entries: 9228222822
DB size: 62569 MB
Avg k-mer size: 7.209549
Top 10 k-mers
FLLLLLA 119427
ATQAYAV 119237
LAYGSGV 119133
SVAYNPS 119059
ACNSPVY 119012
AFKVSSV 118898
KDTAFMV 118862
HALLFPS 118853
EAEMVLS 118801
DTEFEVS 118796
Time for index table init: 0h 0m 47s 822ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 3 of 28)
Query db start 1 to 83353
Target db start 50507506 to 75752992
[=================================================================] 83.35K 4s 136ms
327.204506 k-mers per position
95939 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
237 sequences with 0 size result lists
Time for merging to pref_0_tmp_2: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_2_tmp: 0h 0m 0s 36ms
Process prefiltering step 4 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.25M 13s 29ms
Index table: Masked residues: 143288955
Index table: fill
[=================================================================] 25.25M 25s 141ms
Index statistics
Entries: 9227966295
DB size: 62568 MB
Avg k-mer size: 7.209349
Top 10 k-mers
FLLLLLA 119533
ATQAYAV 119307
LAYGSGV 119181
KLKLNKS 119115
ACNSPVY 119063
AFKVSSV 118965
KDTAFMV 118931
EELNRLQ 118875
KGFNGGS 118870
DTEFEVS 118862
Time for index table init: 0h 0m 48s 107ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 4 of 28)
Query db start 1 to 83353
Target db start 75752993 to 101002036
[=================================================================] 83.35K 4s 6ms
327.204506 k-mers per position
95937 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
222 sequences with 0 size result lists
Time for merging to pref_0_tmp_3: 0h 0m 0s 20ms
Time for merging to pref_0_tmp_3_tmp: 0h 0m 0s 35ms
Process prefiltering step 5 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.25M 12s 950ms
Index table: Masked residues: 143505185
Index table: fill
[=================================================================] 25.25M 27s 40ms
Index statistics
Entries: 9227755068
DB size: 62567 MB
Avg k-mer size: 7.209184
Top 10 k-mers
FLLLLLA 119328
ATQAYAV 119228
LAYGSGV 119103
KLKLNKS 119062
SVAYNPS 119047
ACNSPVY 119006
AFKVSSV 118946
AKTEAKM 118865
EAEMVLS 118834
HALLFPS 118817
Time for index table init: 0h 0m 50s 98ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 5 of 28)
Query db start 1 to 83353
Target db start 101002037 to 126250826
[=================================================================] 83.35K 3s 964ms
327.204506 k-mers per position
95937 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
243 sequences with 0 size result lists
Time for merging to pref_0_tmp_4: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_4_tmp: 0h 0m 0s 37ms
Process prefiltering step 6 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.26M 12s 817ms
Index table: Masked residues: 142595000
Index table: fill
[=================================================================] 25.26M 24s 915ms
Index statistics
Entries: 9228532882
DB size: 62571 MB
Avg k-mer size: 7.209791
Top 10 k-mers
FLLLLLA 118794
ATQAYAV 118541
LAYGSGV 118435
SVAYNPS 118367
ACNSPVY 118333
AFKVSSV 118251
KDTAFMV 118209
TLAASSS 118148
DTEFEVS 118142
YAFTAAY 118132
Time for index table init: 0h 0m 47s 652ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 6 of 28)
Query db start 1 to 83353
Target db start 126250827 to 151510597
[=================================================================] 83.35K 4s 167ms
327.204506 k-mers per position
95949 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
226 sequences with 0 size result lists
Time for merging to pref_0_tmp_5: 0h 0m 0s 20ms
Time for merging to pref_0_tmp_5_tmp: 0h 0m 0s 34ms
Process prefiltering step 7 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.24M 12s 911ms
Index table: Masked residues: 143064858
Index table: fill
[=================================================================] 25.24M 25s 335ms
Index statistics
Entries: 9228139997
DB size: 62569 MB
Avg k-mer size: 7.209484
Top 10 k-mers
FLLLLLA 119578
ATQAYAV 119335
LAYGSGV 119216
ACNSPVY 119129
AFKVSSV 119026
TFVACGS 119011
KDTAFMV 118999
KGFNGGS 118932
EAEMVLS 118930
DTEFEVS 118926
Time for index table init: 0h 0m 47s 823ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 7 of 28)
Query db start 1 to 83353
Target db start 151510598 to 176747180
[=================================================================] 83.35K 3s 544ms
327.204506 k-mers per position
95946 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
235 sequences with 0 size result lists
Time for merging to pref_0_tmp_6: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_6_tmp: 0h 0m 0s 33ms
Process prefiltering step 8 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.24M 13s 49ms
Index table: Masked residues: 142906211
Index table: fill
[=================================================================] 25.24M 24s 858ms
Index statistics
Entries: 9228218364
DB size: 62569 MB
Avg k-mer size: 7.209546
Top 10 k-mers
FLLLLLA 119574
ATQAYAV 119461
LAYGSGV 119349
KLKLNKS 119301
SVAYNPS 119297
ACNSPVY 119256
DTEFEVS 119114
GSLGSSV 119104
EAEMVLS 119076
IAESSSY 119076
Time for index table init: 0h 0m 48s 865ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 8 of 28)
Query db start 1 to 83353
Target db start 176747181 to 201991622
[=================================================================] 83.35K 3s 354ms
327.204506 k-mers per position
95943 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
229 sequences with 0 size result lists
Time for merging to pref_0_tmp_7: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_7_tmp: 0h 0m 0s 40ms
Process prefiltering step 9 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.24M 13s 277ms
Index table: Masked residues: 143167012
Index table: fill
[=================================================================] 25.24M 24s 771ms
Index statistics
Entries: 9227706988
DB size: 62566 MB
Avg k-mer size: 7.209146
Top 10 k-mers
FLLLLLA 119270
ATQAYAV 119148
VLCNGSG 119029
KLKLNKS 119018
LAYGSGV 119009
ACNSPVY 118911
AFKVSSV 118861
KDTAFMV 118814
TFVACGS 118797
HALLFPS 118762
Time for index table init: 0h 0m 47s 763ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 9 of 28)
Query db start 1 to 83353
Target db start 201991623 to 227233566
[=================================================================] 83.35K 4s 81ms
327.204506 k-mers per position
95940 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
235 sequences with 0 size result lists
Time for merging to pref_0_tmp_8: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_8_tmp: 0h 0m 0s 38ms
Process prefiltering step 10 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.27M 12s 914ms
Index table: Masked residues: 143484077
Index table: fill
[=================================================================] 25.27M 23s 658ms
Index statistics
Entries: 9227363345
DB size: 62565 MB
Avg k-mer size: 7.208878
Top 10 k-mers
FLLLLLA 118616
ATQAYAV 118421
LAYGSGV 118270
SVAYNPS 118224
ACNSPVY 118181
AKTEAKM 118072
KDTAFMV 118062
HALLFPS 118010
EAEMVLS 117991
IAESSSY 117981
Time for index table init: 0h 0m 47s 46ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 10 of 28)
Query db start 1 to 83353
Target db start 227233567 to 252499117
[=================================================================] 83.35K 2s 427ms
327.204506 k-mers per position
95923 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
234 sequences with 0 size result lists
Time for merging to pref_0_tmp_9: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_9_tmp: 0h 0m 0s 40ms
Process prefiltering step 11 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.26M 12s 945ms
Index table: Masked residues: 142855153
Index table: fill
[=================================================================] 25.26M 23s 714ms
Index statistics
Entries: 9228395101
DB size: 62570 MB
Avg k-mer size: 7.209684
Top 10 k-mers
FLLLLLA 119213
ATQAYAV 118963
LAYGSGV 118829
SVAYNPS 118758
ACNSPVY 118719
AFKVSSV 118693
TFVACGS 118626
EAEMVLS 118617
HALLFPS 118610
TLAASSS 118601
Time for index table init: 0h 0m 47s 724ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 11 of 28)
Query db start 1 to 83353
Target db start 252499118 to 277755596
[=================================================================] 83.35K 3s 208ms
327.204506 k-mers per position
95935 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
238 sequences with 0 size result lists
Time for merging to pref_0_tmp_10: 0h 0m 0s 20ms
Time for merging to pref_0_tmp_10_tmp: 0h 0m 0s 34ms
Process prefiltering step 12 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.26M 13s 285ms
Index table: Masked residues: 142974728
Index table: fill
[=================================================================] 25.26M 27s 408ms
Index statistics
Entries: 9228468504
DB size: 62571 MB
Avg k-mer size: 7.209741
Top 10 k-mers
FLLLLLA 119297
ATQAYAV 119094
LAYGSGV 119021
SVAYNPS 118946
ACNSPVY 118892
AKTEAKM 118812
KDTAFMV 118789
DTEFEVS 118753
TLAASSS 118741
KMSLSLS 118704
Time for index table init: 0h 0m 50s 704ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 12 of 28)
Query db start 1 to 83353
Target db start 277755597 to 303010804
[=================================================================] 83.35K 4s 489ms
327.204506 k-mers per position
95951 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
237 sequences with 0 size result lists
Time for merging to pref_0_tmp_11: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_11_tmp: 0h 0m 0s 37ms
Process prefiltering step 13 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.27M 12s 621ms
Index table: Masked residues: 142959436
Index table: fill
[=================================================================] 25.27M 23s 629ms
Index statistics
Entries: 9228420122
DB size: 62571 MB
Avg k-mer size: 7.209703
Top 10 k-mers
FLLLLLA 118798
ATQAYAV 118633
LAYGSGV 118538
SVAYNPS 118488
GSLGSSV 118406
ACNSPVY 118405
AKTEAKM 118275
KDTAFMV 118271
KGFNGGS 118234
IAESSSY 118222
Time for index table init: 0h 0m 46s 635ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 13 of 28)
Query db start 1 to 83353
Target db start 303010805 to 328277125
[=================================================================] 83.35K 2s 851ms
327.204506 k-mers per position
95935 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
250 sequences with 0 size result lists
Time for merging to pref_0_tmp_12: 0h 0m 0s 20ms
Time for merging to pref_0_tmp_12_tmp: 0h 0m 0s 41ms
Process prefiltering step 14 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.25M 12s 519ms
Index table: Masked residues: 143023245
Index table: fill
[=================================================================] 25.25M 23s 240ms
Index statistics
Entries: 9227787986
DB size: 62567 MB
Avg k-mer size: 7.209209
Top 10 k-mers
FLLLLLA 119833
ATQAYAV 119558
LAYGSGV 119449
KLKLNKS 119400
ACNSPVY 119335
AFKVSSV 119285
AKTEAKM 119239
KDTAFMV 119231
HALLFPS 119212
DTEFEVS 119189
Time for index table init: 0h 0m 45s 746ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 14 of 28)
Query db start 1 to 83353
Target db start 328277126 to 353524156
[=================================================================] 83.35K 2s 832ms
327.204506 k-mers per position
95948 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
244 sequences with 0 size result lists
Time for merging to pref_0_tmp_13: 0h 0m 0s 20ms
Time for merging to pref_0_tmp_13_tmp: 0h 0m 0s 35ms
Process prefiltering step 15 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.26M 13s 179ms
Index table: Masked residues: 142426452
Index table: fill
[=================================================================] 25.26M 23s 10ms
Index statistics
Entries: 9228514616
DB size: 62571 MB
Avg k-mer size: 7.209777
Top 10 k-mers
FLLLLLA 119560
ATQAYAV 119429
KLKLNKS 119316
LAYGSGV 119252
AFKVSSV 119188
ACNSPVY 119143
GSLGSSV 119078
TLAASSS 119062
DTEFEVS 119044
IAESSSY 119025
Time for index table init: 0h 0m 46s 870ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 15 of 28)
Query db start 1 to 83353
Target db start 353524157 to 378780331
[=================================================================] 83.35K 3s 288ms
327.204506 k-mers per position
95946 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
244 sequences with 0 size result lists
Time for merging to pref_0_tmp_14: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_14_tmp: 0h 0m 0s 44ms
Process prefiltering step 16 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.25M 12s 513ms
Index table: Masked residues: 142856773
Index table: fill
[=================================================================] 25.25M 23s 788ms
Index statistics
Entries: 9228236710
DB size: 62570 MB
Avg k-mer size: 7.209560
Top 10 k-mers
FLLLLLA 119271
ATQAYAV 119152
LAYGSGV 119009
KLKLNKS 118978
SVAYNPS 118952
ACNSPVY 118904
KDTAFMV 118815
TFVACGS 118795
TLAASSS 118781
IAESSSY 118759
Time for index table init: 0h 0m 46s 269ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 16 of 28)
Query db start 1 to 83353
Target db start 378780332 to 404026617
[=================================================================] 83.35K 3s 438ms
327.204506 k-mers per position
95938 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
230 sequences with 0 size result lists
Time for merging to pref_0_tmp_15: 0h 0m 0s 20ms
Time for merging to pref_0_tmp_15_tmp: 0h 0m 0s 35ms
Process prefiltering step 17 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.24M 13s 8ms
Index table: Masked residues: 143248273
Index table: fill
[=================================================================] 25.24M 26s 726ms
Index statistics
Entries: 9228060708
DB size: 62569 MB
Avg k-mer size: 7.209422
Top 10 k-mers
FLLLLLA 119409
ATQAYAV 119274
LAYGSGV 119174
SVAYNPS 119132
ACNSPVY 119047
GSLGSSV 118977
TFVACGS 118933
TLAASSS 118919
IAESSSY 118912
DTEFEVS 118888
Time for index table init: 0h 0m 50s 814ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 17 of 28)
Query db start 1 to 83353
Target db start 404026618 to 429270100
[=================================================================] 83.35K 3s 967ms
327.204506 k-mers per position
95939 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
230 sequences with 0 size result lists
Time for merging to pref_0_tmp_16: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_16_tmp: 0h 0m 0s 33ms
Process prefiltering step 18 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.24M 12s 951ms
Index table: Masked residues: 142925885
Index table: fill
[=================================================================] 25.24M 23s 393ms
Index statistics
Entries: 9228224189
DB size: 62569 MB
Avg k-mer size: 7.209550
Top 10 k-mers
FLLLLLA 119423
ATQAYAV 119261
LAYGSGV 119161
EKVLLLL 119021
ACNSPVY 119015
TTAEKSL 118929
AVNDSVL 118923
KDTAFMV 118899
HALLFPS 118882
TLAASSS 118864
Time for index table init: 0h 0m 46s 810ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 18 of 28)
Query db start 1 to 83353
Target db start 429270101 to 454511824
[=================================================================] 83.35K 2s 933ms
327.204506 k-mers per position
95936 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
248 sequences with 0 size result lists
Time for merging to pref_0_tmp_17: 0h 0m 0s 20ms
Time for merging to pref_0_tmp_17_tmp: 0h 0m 0s 41ms
Process prefiltering step 19 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.24M 13s 178ms
Index table: Masked residues: 142776200
Index table: fill
[=================================================================] 25.24M 24s 813ms
Index statistics
Entries: 9228503924
DB size: 62571 MB
Avg k-mer size: 7.209769
Top 10 k-mers
FLLLLLA 119602
ATQAYAV 119463
KLKLNKS 119295
LAYGSGV 119287
ACNSPVY 119168
GSLGSSV 119159
AFKVSSV 119149
KDTAFMV 119109
DTEFEVS 119050
YAFTAAY 119044
Time for index table init: 0h 0m 47s 596ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 19 of 28)
Query db start 1 to 83353
Target db start 454511825 to 479754227
[=================================================================] 83.35K 4s 466ms
327.204506 k-mers per position
95938 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
230 sequences with 0 size result lists
Time for merging to pref_0_tmp_18: 0h 0m 0s 20ms
Time for merging to pref_0_tmp_18_tmp: 0h 0m 0s 34ms
Process prefiltering step 20 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.26M 12s 995ms
Index table: Masked residues: 142913936
Index table: fill
[=================================================================] 25.26M 24s 136ms
Index statistics
Entries: 9228212791
DB size: 62569 MB
Avg k-mer size: 7.209541
Top 10 k-mers
FLLLLLA 118784
CYGPSYQ 118612
ATQAYAV 118608
LAYGSGV 118530
ACNSPVY 118428
GSLGSSV 118318
AKTEAKM 118297
FEMSLVL 118238
DTEFEVS 118238
TLAASSS 118219
Time for index table init: 0h 0m 46s 933ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 20 of 28)
Query db start 1 to 83353
Target db start 479754228 to 505012522
[=================================================================] 83.35K 3s 332ms
327.204506 k-mers per position
95936 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
238 sequences with 0 size result lists
Time for merging to pref_0_tmp_19: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_19_tmp: 0h 0m 0s 39ms
Process prefiltering step 21 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.25M 12s 882ms
Index table: Masked residues: 143172848
Index table: fill
[=================================================================] 25.25M 24s 287ms
Index statistics
Entries: 9227730556
DB size: 62567 MB
Avg k-mer size: 7.209164
Top 10 k-mers
FLLLLLA 119662
ATQAYAV 119448
LAYGSGV 119363
SVAYNPS 119309
ACNSPVY 119218
AKTEAKM 119144
KDTAFMV 119134
EAEMVLS 119085
HALLFPS 119072
TLAASSS 119071
Time for index table init: 0h 0m 46s 675ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 21 of 28)
Query db start 1 to 83353
Target db start 505012523 to 530259680
[=================================================================] 83.35K 4s 807ms
327.204506 k-mers per position
95932 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
248 sequences with 0 size result lists
Time for merging to pref_0_tmp_20: 0h 0m 0s 26ms
Time for merging to pref_0_tmp_20_tmp: 0h 0m 0s 36ms
Process prefiltering step 22 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.24M 13s 150ms
Index table: Masked residues: 143079947
Index table: fill
[=================================================================] 25.24M 24s 10ms
Index statistics
Entries: 9227802981
DB size: 62567 MB
Avg k-mer size: 7.209221
Top 10 k-mers
FLLLLLA 119529
ATQAYAV 119404
LAYGSGV 119272
SVAYNPS 119213
ACNSPVY 119172
GSLGSSV 119095
TFVACGS 119074
FEMSLVL 119025
DTEFEVS 119014
DNALQAS 118995
Time for index table init: 0h 0m 47s 446ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 22 of 28)
Query db start 1 to 83353
Target db start 530259681 to 555504261
[=================================================================] 83.35K 3s 580ms
327.204506 k-mers per position
95939 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
248 sequences with 0 size result lists
Time for merging to pref_0_tmp_21: 0h 0m 0s 20ms
Time for merging to pref_0_tmp_21_tmp: 0h 0m 0s 34ms
Process prefiltering step 23 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.24M 13s 422ms
Index table: Masked residues: 142626831
Index table: fill
[=================================================================] 25.24M 24s 241ms
Index statistics
Entries: 9228654517
DB size: 62572 MB
Avg k-mer size: 7.209886
Top 10 k-mers
FLLLLLA 119843
ATQAYAV 119629
LAYGSGV 119543
KLKLNKS 119458
ACNSPVY 119440
GSLGSSV 119313
AFKVSSV 119296
TLAASSS 119197
IAESSSY 119193
DTEFEVS 119172
Time for index table init: 0h 0m 49s 473ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 23 of 28)
Query db start 1 to 83353
Target db start 555504262 to 580748443
[=================================================================] 83.35K 2s 820ms
327.204506 k-mers per position
95948 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
249 sequences with 0 size result lists
Time for merging to pref_0_tmp_22: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_22_tmp: 0h 0m 0s 34ms
Process prefiltering step 24 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.27M 12s 849ms
Index table: Masked residues: 142841978
Index table: fill
[=================================================================] 25.27M 25s 548ms
Index statistics
Entries: 9228310384
DB size: 62570 MB
Avg k-mer size: 7.209617
Top 10 k-mers
FLLLLLA 119024
ATQAYAV 118906
LAYGSGV 118727
KLKLNKS 118669
ACNSPVY 118611
AVNDSVL 118524
KDTAFMV 118510
TLAASSS 118485
DTEFEVS 118463
YAFTAAY 118444
Time for index table init: 0h 0m 48s 27ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 24 of 28)
Query db start 1 to 83353
Target db start 580748444 to 606015386
[=================================================================] 83.35K 3s 747ms
327.204506 k-mers per position
95937 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
248 sequences with 0 size result lists
Time for merging to pref_0_tmp_23: 0h 0m 0s 20ms
Time for merging to pref_0_tmp_23_tmp: 0h 0m 0s 40ms
Process prefiltering step 25 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.24M 12s 992ms
Index table: Masked residues: 143171717
Index table: fill
[=================================================================] 25.24M 23s 383ms
Index statistics
Entries: 9228054017
DB size: 62568 MB
Avg k-mer size: 7.209417
Top 10 k-mers
FLLLLLA 119491
ATQAYAV 119359
LAYGSGV 119294
SVAYNPS 119254
ACNSPVY 119168
AKTEAKM 119067
KDTAFMV 119051
EELNRLQ 119003
HALLFPS 118987
TLAASSS 118986
Time for index table init: 0h 0m 46s 669ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 25 of 28)
Query db start 1 to 83353
Target db start 606015387 to 631257545
[=================================================================] 83.35K 3s 344ms
327.204506 k-mers per position
95939 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
242 sequences with 0 size result lists
Time for merging to pref_0_tmp_24: 0h 0m 0s 20ms
Time for merging to pref_0_tmp_24_tmp: 0h 0m 0s 33ms
Process prefiltering step 26 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.27M 13s 377ms
Index table: Masked residues: 143079778
Index table: fill
[=================================================================] 25.27M 23s 740ms
Index statistics
Entries: 9228245800
DB size: 62570 MB
Avg k-mer size: 7.209567
Top 10 k-mers
FLLLLLA 118771
ATQAYAV 118608
LAYGSGV 118520
SVAYNPS 118475
ACNSPVY 118400
KDTAFMV 118328
TFVACGS 118313
EELNRLQ 118266
TLAASSS 118257
DTEFEVS 118256
Time for index table init: 0h 0m 46s 946ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 26 of 28)
Query db start 1 to 83353
Target db start 631257546 to 656524989
[=================================================================] 83.35K 2s 763ms
327.204506 k-mers per position
95937 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
236 sequences with 0 size result lists
Time for merging to pref_0_tmp_25: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_25_tmp: 0h 0m 0s 36ms
Process prefiltering step 27 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.25M 13s 127ms
Index table: Masked residues: 142655582
Index table: fill
[=================================================================] 25.25M 24s 285ms
Index statistics
Entries: 9228312767
DB size: 62570 MB
Avg k-mer size: 7.209619
Top 10 k-mers
FLLLLLA 119387
ATQAYAV 119339
CYGPSYQ 119150
LAYGSGV 119099
EKVLLLL 119049
SVAYNPS 119044
AFKVSSV 119020
ACNSPVY 118985
KDTAFMV 118964
DTEFEVS 118917
Time for index table init: 0h 0m 48s 628ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 27 of 28)
Query db start 1 to 83353
Target db start 656524990 to 681775238
[=================================================================] 83.35K 4s 542ms
327.204506 k-mers per position
95949 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
246 sequences with 0 size result lists
Time for merging to pref_0_tmp_26: 0h 0m 0s 20ms
Time for merging to pref_0_tmp_26_tmp: 0h 0m 0s 34ms
Process prefiltering step 28 of 28
Index table k-mer threshold: 141 at k-mer size 7
Index table: counting k-mers
[=================================================================] 25.25M 12s 948ms
Index table: Masked residues: 143122864
Index table: fill
[=================================================================] 25.25M 24s 76ms
Index statistics
Entries: 9228291574
DB size: 62570 MB
Avg k-mer size: 7.209603
Top 10 k-mers
FLLLLLA 119016
CYGPSYQ 118859
LAYGSGV 118849
KLKLNKS 118743
ACNSPVY 118701
GSLGSSV 118594
AFKVSSV 118566
IAESSSY 118492
DTEFEVS 118479
EAEMVLS 118457
Time for index table init: 0h 0m 47s 401ms
k-mer similarity threshold: 141
Starting prefiltering scores calculation (step 28 of 28)
Query db start 1 to 83353
Target db start 681775239 to 707028945
[=================================================================] 83.35K 2s 896ms
327.204506 k-mers per position
95951 DB matches per sequence
0 overflows
22 sequences passed prefiltering per query sequence
23 median result list length
245 sequences with 0 size result lists
Time for merging to pref_0_tmp_27: 0h 0m 0s 21ms
Time for merging to pref_0_tmp_27_tmp: 0h 0m 0s 36ms
Merging 28 target splits to pref_0
Preparing offsets for merging: 0h 0m 0s 80ms
[=================================================================] 83.35K 0s 671ms
Time for merging to pref_0: 0h 0m 0s 19ms
Time for merging target splits: 0h 0m 1s 817ms
Time for merging to pref_0_tmp: 0h 0m 0s 481ms
Time for processing: 0h 29m 24s 905ms
lcaalign D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_aa /mnt/data4/songjing/database/NR/NR_db D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/tmp_taxonomy/4499761789220285412/tmp_hsp1/15593029152791307246/pref_0 D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/tmp_taxonomy/4499761789220285412/first --sub-mat 'aa:blosum62.out,nucl:nucleotide.out' -a 0 --alignment-mode 0 --alignment-output-mode 0 --wrapped-scoring 0 -e 0.001 --min-seq-id 0 --min-aln-len 0 --seq-id-mode 0 --alt-ali 0 -c 0 --cov-mode 0 --max-seq-len 65535 --comp-bias-corr 1 --comp-bias-corr-scale 1 --max-rejected 2147483647 --max-accept 2147483647 --add-self-matches 0 --db-load-mode 0 --pca substitution:1.100,context:1.400 --pcb substitution:4.100,context:5.800 --score-bias 0 --realign 0 --realign-score-bias -0.2 --realign-max-seqs 2147483647 --corr-score-weight 0 --gap-open aa:11,nucl:5 --gap-extend aa:1,nucl:2 --zdrop 40 --threads 240 --compressed 0 -v 3
Compute score only
Query database size: 83353 type: Aminoacid
Target database size: 707028945 type: Aminoacid
[=================================================================] 83.35K 11s 205ms
Time for merging to first: 0h 0m 0s 32ms
52226573 alignments calculated
4538854 sequence pairs passed the thresholds (0.086907 of overall calculated)
54.453396 hits per query sequence
Time for processing: 0h 0m 58s 34ms
lca /mnt/data4/songjing/database/NR/NR_db D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/tmp_taxonomy/4499761789220285412/first D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_tax --blacklist '12908:unclassified sequences,28384:other sequences' --tax-lineage 0 --compressed 0 --threads 240 -v 3
[=================================================================] 83.35K 1s 394ms
Taxonomy for 5223 out of 794997 entries not found
Time for merging to orfs_tax: 0h 0m 0s 19ms
Time for processing: 0h 0m 23s 520ms
mvdb D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/tmp_taxonomy/4499761789220285412/first D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_tax_aln -v 3
Time for processing: 0h 0m 0s 3ms
swapdb D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_aa_h D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_h_swapped --split-memory-limit 0 --threads 240 --compressed 0 -v 3
[=================================================================] 83.35K 0s 12ms
Computing offsets.
[=================================================================] 83.35K 0s 10ms
Reading results.
[=================================================================] 83.35K 0s 7ms
Output database: D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_h_swapped
[=================================================================] 10.98K 0s 31ms
Time for merging to orfs_h_swapped: 0h 0m 0s 7ms
Time for processing: 0h 0m 0s 232ms
aggregatetaxweights /mnt/data4/songjing/database/NR/NR_db D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_h_swapped D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_tax D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_tax_aln D0B7/tax_tmpDir/9964656498112368933/tax_per_pred --tax-lineage 1 --compressed 0 --threads 240 -v 3
[=================================================================] 10.86K 0s 25ms
Time for merging to tax_per_pred: 0h 0m 0s 8ms
Time for processing: 0h 0m 0s 104ms
filterdb D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_tax_aln D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_tax_aln_first --extract-lines 1 --threads 240 --compressed 0 -v 3
Filtering by extracting the first 1 lines
[=================================================================] 83.35K 0s 37ms
Time for merging to orfs_tax_aln_first: 0h 0m 0s 27ms
Time for processing: 0h 0m 0s 122ms
mergeresultsbyset D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_h_swapped D0B7/tax_tmpDir/9964656498112368933/tmp_taxonomy/1896140333570012273/orfs_tax_aln_first D0B7/tax_tmpDir/9964656498112368933/tax_per_pred_aln --threads 240 --compressed 0 -v 3
Time for merging to tax_per_pred_aln: 0h 0m 0s 10ms
Time for processing: 0h 0m 0s 78ms
aggregatetaxweights /mnt/data4/songjing/database/NR/NR_db D0B7/tax_tmpDir/9964656498112368933/preds_map_num_swapped D0B7/tax_tmpDir/9964656498112368933/tax_per_pred D0B7/tax_tmpDir/9964656498112368933/tax_per_pred_aln D0B7/tax_tmpDir/9964656498112368933/tax_per_contig --tax-lineage 1 --compressed 0 --threads 240 -v 3
[Missing key 8781 in tax result
Error: aggregatetaxweights died