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SARS-CoV-2
Variant Timemaps
2020
2021
# Counts
Genome all variants [slower]
by type
missense
by WHO variants of concern/interest
B.1.1.7 lineage (20I/501Y.V1 UK alpha)
B.1.351 lineage (20H/501Y.V2 ZA beta)
B.1.429 lineage (20C/S:452R US epsilon)
B.1.617 lineage (20A IN kappa)
B.1.617.2 lineage (20A/S IN delta)
B.1.1.529 lineage (omicron)
C.37 lineage (21G PE lambda)
P.1 lineage (20J/501Y.V3 BR/JP gamma)
S gene (spike) all variants [faster]
by type
missense
Africa
Asia
Europe
North America
Oceania
South America
by WHO variants of concern/interest
B.1.1.7 lineage (20I/501Y.V1 UK alpha)
B.1.351 lineage (20H/501Y.V2 ZA beta)
B.1.429 lineage (20C/S:452R US epsilon)
B.1.617 lineage (20A IN kappa)
B.1.617.2 lineage (20A/S IN delta)
B.1.1.529 lineage (omicron)
C.37 lineage (21G PE lambda)
P.1 lineage (20J/501Y.V3 BR/JP gamma)
ORF1ab (polyprotein) gene, missense
ORF3a gene, missense
E (envelope) gene, missense
M (membrane glycoprotein) gene, missense
ORF6 gene, missense
ORF7a gene, missense
ORF8 gene, missense
N (nucleocapsid) gene, missense
ORF10 gene, missense
% Ratios
Genome all variants [slower]
by type
missense
by WHO variants of concern/interest
B.1.1.7 lineage (20I/501Y.V1 UK alpha)
B.1.351 lineage (20H/501Y.V2 ZA beta)
B.1.429 lineage (20C/S:452R US epsilon)
B.1.617 lineage (20A IN kappa)
B.1.617.2 lineage (20A/S IN delta)
B.1.1.529 lineage (omicron)
C.37 lineage (21G PE lambda)
P.1 lineage (20J/501Y.V3 BR/JP gamma)
S gene (spike) all variants [faster]
by type
missense
Africa
Asia
Europe
North America
Oceania
South America
by WHO variants of concern/interest
B.1.1.7 lineage (20I/501Y.V1 UK alpha)
B.1.351 lineage (20H/501Y.V2 ZA beta)
B.1.429 lineage (20C/S:452R US epsilon)
B.1.617 lineage (20A IN kappa)
B.1.617.2 lineage (20A/S IN delta)
B.1.1.529 lineage (omicron)
C.37 lineage (21G PE lambda)
P.1 lineage (20J/501Y.V3 BR/JP gamma)
ORF1ab (polyprotein) gene, missense
ORF3a gene, missense
E (envelope) gene, missense
M (membrane glycoprotein) gene, missense
ORF6 gene, missense
ORF7a gene, missense
ORF8 gene, missense
N (nucleocapsid) gene, missense
ORF10 gene, missense
Download
SNV data
Preprint article
Research article
Presentation
SVG map software
Daily genome variant emergence - animation
Daily spike variant emergence - animation
Weekly spike protein variant emergence - graph
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