SierraLeone2014         Data from 2014 Sierra Leone Ebola epidemic
blowfly                 Nicholson's blowfly data
coef,fitode-method      Extract model coefficients from fitode objects
coef,fitodeMCMC-method
                        Extract model coefficients from fitodeMCMC
                        objects
confint,fitode-method   Calculate confidence intervals from fitode
                        objects for model parameters and their
                        transformations
confint,fitodeMCMC-method
                        Calculate credible intervals from fitodeMCMC
                        objects for model parameters and their
                        transformations
fitode                  Fit ordinary differential equations model
fitode-class            Class "fitode". Result of ode fitting based on
                        Maximum Likelihood Estimation
fitodeMCMC              Fit ordinary differential equations model using
                        MCMC
fitodeMCMC-class        Class "fitodeMCMC". Result of ode fitting based
                        on Markov Chain Monte Carlo (MCMC)
initialize,odemodel-method
                        Constructor method of "odemodel" class
logLik,fitode-method    Extract log-likelihood
loglik.ode-class        Class representing log-likelihood models used
                        to fit ode models
plot,fitode,missing-method
                        Plot a fitode object
plot,fitodeMCMC,missing-method
                        Plot a fitodeMCMC object
plot_internal           Internal function for plotting methods
predict,fitode-method   Prediction function for fitode objects
predict,fitodeMCMC-method
                        Prediction function for fitodeMCMC objects
prior.ode-class         Class representing prior models used to fit ode
                        models
profile,fitode-method   Profile fitode objects
simulate,fitode-method
                        simulate fitode objects
simulate,odemodel-method
                        simulate model objects
simulate_internal       Internal function for simulation models
stdEr,fitode-method     Extract standard error from fitode objects
stdEr,fitodeMCMC-method
                        Extract standard error from fitodeMCMC objects
summary,fitode-method   Summarize fitode object
summary,fitodeMCMC-method
                        Summarize fitodeMCMC object
tumorgrowth             Tumor growth data
update,fitode-method    Update fitode fits
update,fitodeMCMC-method
                        Update fitodeMCMC fits
vcov,fitode-method      Extract variance-covariance matrix from fitode
                        objects
vcov,fitodeMCMC-method
                        Extract variance-covariance matrix from
                        fitodeMCMC objects
