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Table of Contents

September 2005; 15 (9)

ARTICLES

  • Evolutionary mechanisms shaping the genomic structure of the Williams-Beuren syndrome chromosomal region at human 7q11.23

    • Anna Antonell,
    • Oscar de Luis,
    • Xavier Domingo-Roura,
    • and Luis Alberto Pérez-Jurado
    Genome Res. September 2005 15: 1179-1188; doi:10.1101/gr.3944605

  • ATG deserts define a novel core promoter subclass

    • Maxwell P. Lee,
    • Kevin Howcroft,
    • Aparna Kotekar,
    • Howard H. Yang,
    • Kenneth H. Buetow,
    • and Dinah S. Singer
    Genome Res. September 2005 15: 1189-1197; Published in Advance August 18, 2005, doi:10.1101/gr.3873705

  • Comparative genomics of Gossypium and Arabidopsis: Unraveling the consequences of both ancient and recent polyploidy

    • Junkang Rong,
    • John E. Bowers,
    • Stefan R. Schulze,
    • Vijay N. Waghmare,
    • Carl J. Rogers,
    • Gary J. Pierce,
    • Hua Zhang,
    • James C. Estill,
    • and Andrew H. Paterson
    Genome Res. September 2005 15: 1198-1210; Published in Advance August 18, 2005, doi:10.1101/gr.3907305

LETTERS

  • Fitting background-selection predictions to levels of nucleotide variation and divergence along the human autosomes

    • Floyd A. Reed,
    • Joshua M. Akey,
    • and Charles F. Aquadro
    Genome Res. September 2005 15: 1211-1221; doi:10.1101/gr.3413205

  • Why do human diversity levels vary at a megabase scale?

    • Ines Hellmann,
    • Kay Prüfer,
    • Hongkai Ji,
    • Michael C. Zody,
    • Svante Pääbo,
    • and Susan E. Ptak
    Genome Res. September 2005 15: 1222-1231; doi:10.1101/gr.3461105
    OPEN ACCESS ARTICLE

  • Independent intrachromosomal recombination events underlie the pericentric inversions of chimpanzee and gorilla chromosomes homologous to human chromosome 16

    • Violaine Goidts,
    • Justyna M. Szamalek,
    • Pieter J. de Jong,
    • David N. Cooper,
    • Nadia Chuzhanova,
    • Horst Hameister,
    • and Hildegard Kehrer-Sawatzki
    Genome Res. September 2005 15: 1232-1242; doi:10.1101/gr.3732505

  • Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates

    • Louie N. van de Lagemaat,
    • Liane Gagnier,
    • Patrik Medstrand,
    • and Dixie L. Mager
    Genome Res. September 2005 15: 1243-1249; doi:10.1101/gr.3910705

  • Ancient haplotypes of the HLA Class II region

    • Christopher K. Raymond,
    • Arnold Kas,
    • Marcia Paddock,
    • Ruolan Qiu,
    • Yang Zhou,
    • Sandhya Subramanian,
    • Jean Chang,
    • Anthony Palmieri,
    • Eric Haugen,
    • Rajinder Kaul,
    • and Maynard V. Olson
    Genome Res. September 2005 15: 1250-1257; doi:10.1101/gr.3554305

  • Origin and evolution of new exons in rodents

    • Wen Wang,
    • Hongkun Zheng,
    • Shuang Yang,
    • Haijing Yu,
    • Jun Li,
    • Huifeng Jiang,
    • Jianning Su,
    • Lei Yang,
    • Jianguo Zhang,
    • Jason McDermott,
    • Ram Samudrala,
    • Jian Wang,
    • Huanming Yang,
    • Jun Yu,
    • Karsten Kristiansen,
    • Gane Ka-Shu Wong,
    • and Jun Wang
    Genome Res. September 2005 15: 1258-1264; Published in Advance August 18, 2005, doi:10.1101/gr.3929705

  • Genome-wide HP1 binding in Drosophila: Developmental plasticity and genomic targeting signals

    • Elzo de Wit,
    • Frauke Greil,
    • and Bas van Steensel
    Genome Res. September 2005 15: 1265-1273; Published in Advance August 18, 2005, doi:10.1101/gr.3198905

  • A microarray analysis of the rice transcriptome and its comparison to Arabidopsis

    • Ligeng Ma,
    • Chen Chen,
    • Xigang Liu,
    • Yuling Jiao,
    • Ning Su,
    • Lin Li,
    • Xiangfeng Wang,
    • Mengliang Cao,
    • Ning Sun,
    • Xiuqing Zhang,
    • Jingyue Bao,
    • Jian Li,
    • Soren Pedersen,
    • Lars Bolund,
    • Hongyu Zhao,
    • Longping Yuan,
    • Gane Ka-Shu Wong,
    • Jun Wang,
    • Xing Wang Deng,
    • and Jian Wang
    Genome Res. September 2005 15: 1274-1283; doi:10.1101/gr.3657405

  • Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species

    Genome Res. September 2005 15: 1284-1291; Published in Advance August 18, 2005, doi:10.1101/gr.3869505

  • The evolutionary fate of MULE-mediated duplications of host gene fragments in rice

    • Nikoleta Juretic,
    • Douglas R. Hoen,
    • Michael L. Huynh,
    • Paul M. Harrison,
    • and Thomas E. Bureau
    Genome Res. September 2005 15: 1292-1297; doi:10.1101/gr.4064205

Methods

  • A network of transcriptionally coordinated functional modules in Saccharomyces cerevisiae

    • Allegra A. Petti and
    • George M. Church
    Genome Res. September 2005 15: 1298-1306; Published in Advance August 18, 2005, doi:10.1101/gr.3847105

RESOURCE

  • The zebrafish gene map defines ancestral vertebrate chromosomes

    • Ian G. Woods,
    • Catherine Wilson,
    • Brian Friedlander,
    • Patricia Chang,
    • Daengnoy K. Reyes,
    • Rebecca Nix,
    • Peter D. Kelly,
    • Felicia Chu,
    • John H. Postlethwait,
    • and William S. Talbot
    Genome Res. September 2005 15: 1307-1314; Published in Advance August 18, 2005, doi:10.1101/gr.4134305
    OPEN ACCESS ARTICLE
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This Issue

September 2005; 15 (9)
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  1. ARTICLES
  2. LETTERS
  3. Methods
  4. RESOURCE

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