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Commits on Apr 1, 2022

• Add stubs to cnvpytor module (#1473)

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  ramprasadn

  and

  sima-r

  authored
  67c1bc9

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• Update DASTool to 1.1.4 (#1471)

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  3 peopleauthored
  8ce6810

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Commits on Mar 31, 2022

• Add task.ext.args to phantompeakqualtools and finish the module (#1474)

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  JoseEspinosa

  authored
  5e7daa7

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• Update PyDamage module (#1467)

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  5 peopleauthored
  64b06ba

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• New Module: `gstama/polyacleanup` (#1468)

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  sguizard

  and

  sateeshperi

  authored
  794f845

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• Update cat module (#1469)

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  ramprasadn

  and

  JoseEspinosa

  authored
  eeda413

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• fix cnvpytor links (#1470)

  ramprasadn

  authored
  233f2e7

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Commits on Mar 30, 2022

• feat: add module for seqkit stats (#1466)

  Midnighter

  authored
  0de6406

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• Revert recent changes made to some of the modules (#1463)

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  ramprasadn

  authored
  fd5f6f5

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• svdb update to 2.6.0 (#1465)

  ramprasadn

  authored
  a973b68

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Commits on Mar 29, 2022

• Fix typo (#1464)

  FriederikeHanssen

  authored
  1ec1868

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• Bump chromap version 0.2.1 (#1462)

  JoseEspinosa

  authored
  dbb46c9

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Commits on Mar 28, 2022

• add stub to modules used in raredisease pipeline (#1206)

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  ramprasadn

  authored
  49b18b1

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• Dastool update to allow non-gzipped inputs (#1458)

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  jfy133

  and

  d4straub

  authored
  240ee43

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• Add kaiju_kaiju module (#1448)

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  talnor

  and

  jfy133

  authored
  1f483d9

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Commits on Mar 27, 2022

• Update svdb/merge (#1449)

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  ramprasadn

  authored
  cc671a5

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• Fix homer/maketagdirectory output collision (#1456)

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  edmundmiller

  authored
  5832fbc

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Commits on Mar 26, 2022

• add freec2circos script (#1454)

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  FriederikeHanssen

  authored
  5acf301

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Commits on Mar 25, 2022

• add makegraph script (#1452)

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  FriederikeHanssen

  authored
  28e5211

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• add freec2bed script (#1453)

  FriederikeHanssen

  authored
  8a64e73

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• controlfreec significance (#1451)

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  FriederikeHanssen

  authored
  4efa8da

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• Add samtools to homer/maketagdirectory to use bam files (#1437)

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  edmundmiller

  and

  FriederikeHanssen

  authored
  2793672

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• Split preseq lcextrap and ccurve (#1440)

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  edmundmiller

  authored
  7111e57

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• Add tests for umitools extract and dedup (#1429)

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  4 peopleauthored
  a066456

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• refactor(homer): Update output path for bedGraph (#1438)

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  edmundmiller

  authored
  1fb1801

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• feat(homer): Add pos2bed module (#1435)

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  edmundmiller

  and

  FriederikeHanssen

  authored
  98ed71c

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• CAT: Use meta map and supply output file name via modules.config (#1446)

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  FriederikeHanssen

  authored
  3d31fa4

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• feat: add readgroup info + reorder samtools command line to mimic bwamem (#1447)

  maxulysse

  authored
  e786457

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• Mpileup also likes intervals (#1445)

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  3 peopleauthored
  b5825fe

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• Homer/findpeaks improvements (#1436)

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  edmundmiller

  and

  rpetit3

  authored
  e3a5795

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• add module for panaroo, fix pirate tests (#1444)

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  rpetit3

  authored
  d16f1ea

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Commits on Mar 24, 2022

• feat(bbmap): Initialize pileup module (#1441)

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  edmundmiller

  and

  rpetit3

  authored
  6806cd1

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• style(deeptools): Indent script (#1439)

  edmundmiller

  authored
  fe08874

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• Update dragonflye to latest version (#1442)

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  rpetit3

  authored
  608bb22

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• update bakta to latest version (v1.4.0) (#1428)

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  rpetit3

  and

  ramprasadn

  authored
  dfbb0bc

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