Deep Learning Utilities for Pathology

Dlup offers a set of utilities to ease the process of running Deep Learning algorithms on Whole Slide Images.

Check the full documentation for more details on how to use dlup.

Features

Dataset classes to handle whole-slide images in a tile-by-tile manner
Annotation classes which can load GeoJSON and ASAP formats and convert these to masks.
Command-line utilities to report on the metadata of WSIs, tile WSIs, and convert masks to polygons.

The package can be installed using pip install dlup.

Name		Name	Last commit message	Last commit date
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.github		.github
dlup		dlup
docker		docker
docs		docs
tests		tests
.editorconfig		.editorconfig
.gitignore		.gitignore
.mypy.ini		.mypy.ini
.pre-commit-config.yaml		.pre-commit-config.yaml
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CONTRIBUTING.rst		CONTRIBUTING.rst
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
Makefile		Makefile
README.md		README.md
codecov.yml		codecov.yml
pyproject.toml		pyproject.toml
setup.cfg		setup.cfg
setup.py		setup.py