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TranseqFlow-PE
TranseqFlow-PE PublicForked from saifeldeen-bio/TranseqFlow-PE
Transcriptome upstream analysis pipeline with Nextflow for paired-end reads. It performs quality check with FASTQC and MultiQC, trimming with Trimmomatic, alignment with STAR, and quantification of…
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16S-rRNA-amplicon
16S-rRNA-amplicon PublicForked from farhadm1990/16S-rRNA-amplicon
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16S-Demo
16S-Demo PublicForked from ycl6/16S-Demo
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
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PyDESeq2
PyDESeq2 PublicForked from owkin/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
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WholeGenomeSequencing-WGS
WholeGenomeSequencing-WGS PublicForked from flowhub-team/WholeGenomeSequencing-WGS
Whole Genome Sequencing analysis, WGS analysis
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FastANI
FastANI PublicForked from ParBLiSS/FastANI
Fast Whole-Genome Similarity (ANI) Estimation
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