Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Mar 21, 2023

• Fix tyop in fastq_fastqc_umitools_trimgalore subworkflow (#3067)

  drpatelh

  authored
  100caf3

  Copy full SHA for 100caf3

• Bump gatk4 across the board (#3045)

  Show description for 6437566
  matthdsm

  authored
  6437566

  Copy full SHA for 6437566

• New fastq_fastqc_umitools_fastp subworkflow (#3063)

  Show description for 4c8c5b5
  

  robsyme

  and

  drpatelh

  authored
  4c8c5b5

  Copy full SHA for 4c8c5b5

• Add logic to filter reads based on read count after trimming to fastq_fastqc_umitools_trimgalore subworkflow (#3062)

  Show description for a1e1f3f
  

  robsyme

  and

  drpatelh

  authored
  a1e1f3f

  Copy full SHA for a1e1f3f

• New module bcftools call (#3052)

  LouisLeNezet

  authored
  98d5cc5

  Copy full SHA for 98d5cc5

• Fix memory usage for most java tools (#3064)

  Show description for 75027bf
  

  3 peopleauthored
  75027bf

  Copy full SHA for 75027bf

• Add Bedtools unionbedg (#3036)

  Show description for ab5d870
  

  3 peopleauthored
  ab5d870

  Copy full SHA for ab5d870

• add vsearch/sort module (#3057)

  Show description for 2729a01
  mirpedrol

  authored
  2729a01

  Copy full SHA for 2729a01

• Bedtools intersect - update to include chrom_sizes as input (#3056)

  Show description for fc44fae
  

  3 peopleauthored
  fc44fae

  Copy full SHA for fc44fae

Commits on Mar 19, 2023

• Samtools coverage (#3053)

  Show description for 6fd6373
  LouisLeNezet

  authored
  6fd6373

  Copy full SHA for 6fd6373

Commits on Mar 17, 2023

• Fix typo in args2 directive (#3051)

  Show description for ad1b48c
  SusiJo

  authored
  ad1b48c

  Copy full SHA for ad1b48c

• Add new samtools coverage (#3050)

  Show description for 60e09d9
  LouisLeNezet

  authored
  60e09d9

  Copy full SHA for 60e09d9

• adding gffcompare (#3042)

  Show description for 4e35019
  jemten

  authored
  4e35019

  Copy full SHA for 4e35019

Commits on Mar 16, 2023

• fix missing descriptions and keywords in meta.yml (#3040)

  klkeys

  authored
  2f398a6

  Copy full SHA for 2f398a6

• New module: Plink exclude (#3032)

  Show description for 2d69c3e
  

  atrigila

  and

  nvnieuwk

  authored
  2d69c3e

  Copy full SHA for 2d69c3e

• Fix bug in salmon/index module when generating decoys (#3043)

  Show description for cfef219
  drpatelh

  authored
  cfef219

  Copy full SHA for cfef219

• Add tbi creation to delly (#3037)

  Show description for 0263ccf
  nvnieuwk

  authored
  0263ccf

  Copy full SHA for 0263ccf

Commits on Mar 15, 2023

• fix: redirect kraken2 output to /dev/null (#3038)

  Show description for 7c695e0
  Midnighter

  authored
  7c695e0

  Copy full SHA for 7c695e0

• Created hla-la/typing and hla-la/preparegraph module (#2446)

  Show description for 7fc542c
  

  3 peopleauthored
  7fc542c

  Copy full SHA for 7fc542c

• join input files (#3030)

  Show description for c7f047d
  

  danilodileo

  and

  Danilo Di Leo

  authored
  c7f047d

  Copy full SHA for c7f047d

• Add Bedtools shift (#3031)

  Show description for 87f3c80
  

  3 peopleauthored
  87f3c80

  Copy full SHA for 87f3c80

Commits on Mar 14, 2023

• update bcftools norm (#3023)

  Show description for bcad95f
  atrigila

  authored
  bcad95f

  Copy full SHA for bcad95f

• Limit gatk4 heap size (#3027)

  Show description for a252064
  matthdsm

  authored
  a252064

  Copy full SHA for a252064

Commits on Mar 13, 2023

• Glimpse concordance (#3029)

  Show description for b04f9ed
  

  LouisLeNezet

  and

  nvnieuwk

  authored
  b04f9ed

  Copy full SHA for b04f9ed

• Taxpasta version 0.2.3 (#3026)

  sofstam

  authored
  ffa9641

  Copy full SHA for ffa9641

Commits on Mar 11, 2023

• Bump software versions for modules used in nf-core/viralrecon (#3024)

  Show description for b6d4d47
  drpatelh

  authored
  b6d4d47

  Copy full SHA for b6d4d47

Commits on Mar 10, 2023

• Add type/pattern (#2980)

  Show description for 24fa30c
  

  3 peopleauthored
  24fa30c

  Copy full SHA for 24fa30c

• update bam_variant_calling_freebayes subworkflow acc. to nf-core guidelines (#3015)

  Show description for f624276
  ramprasadn

  authored
  f624276

  Copy full SHA for f624276

• Update subworkflow to adhere to the guidelines (#2979)

  Show description for 901fab5
  nvnieuwk

  authored
  901fab5

  Copy full SHA for 901fab5

• update bedtools/makewindows (#3009)

  Show description for 007c99a
  nvnieuwk

  authored
  007c99a

  Copy full SHA for 007c99a

• update fasta_index_dna subworkflow acc. to nf-core guidelines (#3016)

  Show description for 365f3a8
  ramprasadn

  authored
  365f3a8

  Copy full SHA for 365f3a8

• update fastq align bwaaln to guidelines (#2990)

  nvnieuwk

  authored
  63f0032

  Copy full SHA for 63f0032

• Add mapAD/index module (#3022)

  Show description for c19d54b
  

  jch-13

  and

  jfy133

  authored
  c19d54b

  Copy full SHA for c19d54b

• Glimpse2 concordance (#3007)

  Show description for 7a6733b
  

  LouisLeNezet

  and

  matthdsm

  authored
  7a6733b

  Copy full SHA for 7a6733b

Commits on Mar 9, 2023

• Cellranger update (#3013)

  Show description for abe9c71
  

  apeltzer

  and

  grst

  authored
  abe9c71

  Copy full SHA for abe9c71

Pagination

Previous

Next