Umac is a multiple alignment converter.
This package is based on activities of the OGMP (i.e, priori to 2002), and becomes open source as part of MFannot.
- Install the PirObject library.
- Install all the necessary PirModels.
- Copy
umacin one of your executable directory (e.g: a directory list in $PATH).
Note: At this point the installation of umac was only tested on Unix system (Ubuntu and CentOS).
In order to get the help page of umac you need to type umac -h in your terminal.
| Format (-f) | Description | Programs (-p) |
|---|---|---|
| CLUSTAL | Clustal W (interleaved) | clustalw |
| FASTA | FASTA (Pearson) | jknife, phyms |
| GDE | GDE | gde |
| NEXUS | NEXUS (Paup) | paup |
| Phylip-I | Phylip interleaved | IQPNNI, RAxMLHPC |
| Phylip-N | Phylip non-interleaved | pb |
| RAW | Raw (one line per seq) | RNAfold |
| STOCKHOLM | Stockholm (interleaved) | hmmer, infernal |
Please see CONTRIBUTING and CONDUCT for details.
GNU General Public License v3.0. Please see License File for more information.