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Commits on Jun 21, 2022

• Update to devel version nr

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• Fix URLs from http to https for CRAN resubmission

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• Fix typos

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• Fix README typo, update version nr, and prep for CRAN submission

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• Clean up `naive` vignette; mention it and useR citation in README

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Commits on Jun 12, 2022

• Add useR! 2022 conf poster to `data-raw`

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• Add bench::mark and profvis results to `naive` vignette

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Commits on Jun 8, 2022

• Hide array code from vignette (too slow and memory-intensive; causes GHA checks to fail)

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• Move CIPerm_naive.R into a vignette

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Commits on Jun 6, 2022

• Draft code for comparing to naive approach (for a future vignette)

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Commits on May 3, 2022

• Update Nguyen links from URLs to DOIs

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Commits on Apr 26, 2022

• Add CRAN install instructions to README :)

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• Add CRAN downloads badge! and URL, BugReports fields

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Commits on Apr 25, 2022

• Initial submission to CRAN

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• Specify Language: en-US

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• Add cran-comments.md

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• Add NEWS; write names in LICENSE

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• Cite Nguyen's PDXScholar link; add JW's ORCID; show fn args in examples; in MC demo use nmc=999 like Nguyen

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Commits on Mar 22, 2022

• Add error checks and code comments to dset(); update version nr to 0.2.0 since this should be an initial stable release

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• Replace old dset code with dsetFast code, and remove dsetFast

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• Fix cint() issue when siglevel*num should be an integer but ceiling() rounds it too high; explain why conf.level.achieved can be anti-conservative in cint() docs

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Commits on Mar 21, 2022

• Add notes to self on dsetFast speed/accuracy checks

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• cint() returns *achieved* conf level; add vignette note about impossibility of conf levels 94.9% or 94.94% in the wl/al examples

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• Add Tableman as advisor to Nguyen (2009) citations

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• Add summary of Nguyen (2009)'s method to vignette

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• Clean up docs

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• Change cint/pval arg `data` to `dset` and cint arg `sig` to `conf.level`; update function docs

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Commits on Mar 18, 2022

• Allow pval() to return a vector of all 4 p-vals

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• Import matrixStats::colMedians for dsetFast()

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• Add GitHub Actions R-CMD-check

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• Add returnData arg to dset() to allow returning only the min needed for cint() and pval(). Fix > to >= in pval(). Add Ernst 2004 results to vignette checks. Clean up docs, add references.

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Commits on Feb 8, 2022

• Fix bugs in dsetFast, check output against dset, and confirm it's faster (7x!) using microbenchmark

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Commits on Feb 7, 2022

• Draft a faster version of dset()

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• Change version nr after dset(nmc) update

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• Allow dset(nmc) to choose Monte Carlo sample of perms instead of complete enum of all combos. Edit cint() to handle multiple k=0 rows. Edit vignette to test MC outcome.

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