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Commits on Apr 7, 2025

• change environment.yml bioconda::metaspace2020

  Dewey-Wang

  committed
  81448d6

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• Merge branch 'nf-core:master' into dev

  Dewey-Wang

  authored
  bc7a548

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• Fix to rnaseq preprocessing linting fix (#8221)

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  pinin4fjords

  authored
  a9d1fd8

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Commits on Apr 6, 2025

• Fix: PoolSNP: Update input tuple; cleanup stub (#8218)

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  abhilesh

  authored
  5b22bfa

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Commits on Apr 5, 2025

• added stub

  Dewey-Wang

  committed
  0d97439

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• Merge branch 'nf-core:master' into dev

  Dewey-Wang

  authored
  33c4a1a

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• Update tj-actions/changed-files digest to 6cb76d0 (#8217)

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  renovate[bot]

  authored
  1fb0009

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Commits on Apr 4, 2025

• change MUSE_SUMP to high memory module (#8212)

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  famosab

  authored
  89e14c5

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Commits on Apr 3, 2025

• Fix one more typo (#8207)

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  mashehu

  authored
  bbd58fe

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• update vep to 113.4 and redo conda tests (#8205)

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  nvnieuwk

  authored
  7452092

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• fix typo in gpu-snapshot updater (#8204)

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  mashehu

  authored
  d14e5f4

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• add nf-test and stub to svtk/standardize (#7768)

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  kubranarci

  authored
  5b3b6d2

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• run update snapshot on gpu runners (#8201)

  mashehu

  authored
  bd2f4e2

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• fix formatting in sylphtax/taxprof (#8202)

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  mashehu

  and

  sofstam

  authored
  7775999

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• fixed bug in bandage/image module, wrong versions.yml outputted (#8196)

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  saramonzon

  authored
  84c05b8

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• Mindagap stub and test updates (#8200)

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  kbestak

  authored
  a84e5d6

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• Update dependency python to 3.13 (#8189)

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  renovate[bot]

  authored
  00691a4

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• add gpu snapshot updater action (#8183)

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  mashehu

  authored
  8d21f48

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Commits on Apr 2, 2025

• add module integronfinder (#8131)

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  nguyent-son

  and

  LouisLeNezet

  authored
  7658b57

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• Merge branch 'master' into dev

  Dewey-Wang

  authored
  9089fc7

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• Update shinyngs modules (#8194)

  pinin4fjords

  authored
  0d290ba

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• Support formula in `abundance_differential_filter` and associated modules (#8171)

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  atrigila

  and

  pinin4fjords

  authored
  25c228d

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• Add threads parameter for all seqkit modules missing (#8192)

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  jfy133

  authored
  9fe7867

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• Add functionality for `--unknown-slide` in `spaceranger/count` (#7233)

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  6 peopleauthored
  12a91a4

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• updated artic to latest version (#8186)

  saramonzon

  authored
  bf8db25

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Commits on Apr 1, 2025

• Update bcftools (#8182)

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  saramonzon

  and

  SPPearce

  authored
  c9c3ef8

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• update freyja module to latest version (#8184)

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  saramonzon

  authored
  af80d3e

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• portcullis/full: accommodate more outputs (#8166)

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  anoronh4

  and

  jblancoheredia

  authored
  1a10aef

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• updated bandage image to latest version (#8185)

  saramonzon

  authored
  16d40ec

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• Change FastQC memory parameter from float to int (#8180)

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  Schmytzi

  authored
  b1966f3

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• Update version for updateblastdb (#8181)

  SPPearce

  authored
  061f2fb

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• Update blast modules to latest version (#8179)

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  saramonzon

  authored
  be58de7

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• update cutadapt module to latest version (#8176)

  saramonzon

  authored
  4c4eacf

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• update fastp to latest version, snapshots updated (#8175)

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  saramonzon

  authored
  d082103

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Commits on Mar 31, 2025

• Added module gatk4/unmarkduplicates (#8063)

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  3 peopleauthored
  7971099

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