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Commits on Oct 24, 2025

• - Updated DESCRIPTION

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Commits on Aug 12, 2025

• - Adjusted verbosity of xestars() when no c value is sleected BEFORE convergence

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Commits on Aug 4, 2025

• - Trying to update the github action upload-artifact to v4

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• - Did not save the updates to NEWS file in previous commit, so here they are, LOL

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• - Changed the X(E)StARS framework: c is now known to influence network density, and, as a consequence, stability. For this reason the famework was extended to not only jumping between lambda_w and …

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Commits on Jul 22, 2025

• - Updated Description for version 1.0.2.9001

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• - Corrected major mistake in the xstars() code, lambda_b selection was actually never happening correctly.

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Commits on Oct 18, 2024

• - Introduced the new parameter icov_guess, an initial guess for the inverse covariance matrix (for D==2)

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Commits on Aug 8, 2024

• - Corrected update rule for new version

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Commits on Jul 11, 2024

• - Finalized solution of last two bugs, and implemented relative tests

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• - Debugged get_network for when input data has no colnames

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• - Solved a bug taking place when only one combination of hyperparameters is given.

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Commits on Jun 28, 2024

• - Current xestars() version records also the variability associated with lambdas (should update the "Value" section of the documentation)

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Commits on Jun 14, 2024

• - Implemented testing suite for general |D|

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Commits on May 21, 2024

• - Added logo

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Commits on May 6, 2024

• - Implemented a switch to previous coglasso 2-layers approach if there are only two layers, as it may behave a bit faster.

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Commits on May 3, 2024

• - Adjusted format examples.

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• - Implemented the general |D| version of coglasso, able to build networks from multiple omics layers.

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Commits on May 1, 2024

• - Increased test coverage

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Commits on Apr 29, 2024

• - Implemented plot() module for classes coglasso and select_coglasso.

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Commits on Apr 23, 2024

• - Solved a few warnings and messages from last commit.

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• - Implemented coglasso and select_coglasso S3 classes, returned, respectively, by coglasso() and by all functions performing model selection.

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Commits on Apr 22, 2024

• - Implemented bs(), a single wrapping function for coglasso() and select_coglasso()

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Commits on Apr 19, 2024

• - Updated manual pages and debugged tests

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• - Implemented xestars(), a faster and more memory-efficient version of xstars(). Added a voice to NEWS file for more details on the improvements.

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Commits on Apr 16, 2024

• - Added downloads to README

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Commits on Apr 11, 2024

• - Began the deprecation process of stars_coglasso(), renamed to the more accurate xstars().

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• - Introduced the model selection wrapping function select_coglasso()

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Commits on Apr 5, 2024

• - Updated README with CRAN installation instructions

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• -deleted cran submission file from devtools

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• Increment version number to 1.0.2.9000

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• - Made DESCRIPTION file and examples of the package compliant to CRAN policies

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Commits on Apr 3, 2024

• Increment version number to 1.0.2

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Commits on Mar 30, 2024

• Increment version number to 1.0.1

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• - More explicative and referenced Description field in DESCRIPTION file

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