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missing explaination of mikado.bed in tutorial #385

@cooketho

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@cooketho

Can you please help me understand something about the tutorial? I'm reading here:

https://mikado.readthedocs.io/en/latest/Tutorial/

and I see at the mikado serialize step there is a command which uses a file called mikado.bed:

mikado serialise --json-conf configuration.yaml --xml mikado.blast.xml.gz --orfs mikado.bed --blast_targets

but I can't seem to find any step where this file was created, or any previous reference to it in the tutorial. I see a reference to orfs.bed, which the tutorial indicates is from transdecoder. Is this a typo, and the command should have passed orfs.bed to --orfs? Or is this something else? Furthermore, it looks like the text of that command got cut off in the tutorial because --blast_targets needs an argument, but it doesn't have one.

Thanks!

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