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Commits on Nov 8, 2024

• Remove pytest remainings (#6962)

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  LeonHafner

  authored
  5a03dfa

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• Add FCSGX_RUNGX (#6952)

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  mahesh-panchal

  authored
  ca0b47f

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• chore(deps): update tj-actions/changed-files action to v45 (#6958)

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  renovate[bot]

  authored
  f8cba37

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• chore(deps): update github actions (#6957)

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  renovate[bot]

  authored
  b55cf80

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Commits on Nov 7, 2024

• Enable Harshil Alignment (#6956)

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  edmundmiller

  authored
  3f6e7c2

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• ci: Use correct job name (#6955)

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  edmundmiller

  authored
  c964430

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• Skip wave if the PR is from a fork (#6954)

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  edmundmiller

  authored
  6d2697d

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• Add FCSGX_FETCHDB (#6948)

  mahesh-panchal

  authored
  dfe1c9a

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• Add CI to build mulled containers with Wave (#4080)

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  edmundmiller

  and

  ewels

  authored
  669eb24

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• Add hostile/fetch (#6949)

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  3 peopleauthored
  a2db453

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• Tidy up Python script to fetch Singularity HTTPS image URLs (#6945)

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  ewels

  authored
  033f2f2

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• Add metamdbg module (#6885)

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  prototaxites

  and

  SPPearce

  authored
  7c08494

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• Hiphase - new module (#6854)

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  7 peopleauthored
  d29fcb4

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Commits on Nov 6, 2024

• Update quast container (#6943)

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  nschan

  authored
  ed2d77c

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• 5127 new module xenium ranger (#6826)

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  9 peopleauthored
  b5e1891

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Commits on Nov 5, 2024

• remove pre-commit config validator hook (#6940)

  mashehu

  authored
  395b541

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• add anndata/barcodes module (#6911)

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  chaochaowong

  and

  LeonHafner

  authored
  05e4d64

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• Expect input of prefixes to KrakenUniq (#6912)

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  Midnighter

  authored
  2512434

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• nf-test rtgtools format (#6939)

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  nvnieuwk

  authored
  167a20a

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• Add new module for filtering tables of differential statistics (#6938)

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  pinin4fjords

  authored
  833a654

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• 325 mixed model in limma (#6910)

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  KamilMaliszArdigen

  and

  pinin4fjords

  authored
  136f443

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• New module: scvitools/solo single-cell doublet detection (#6891)

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  3 peopleauthored
  6951806

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• Bump checkm/qa version (#6919)

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  dialvarezs

  and

  LeonHafner

  authored
  3ea3181

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• Update Version of UMICollapse to 1.1.0 (#6805)

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  MatthiasZepper

  and

  sateeshperi

  authored
  78991a2

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• Update SVDB merge label (#6916)

  fellen31

  authored
  a8ad84b

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• Bump stranger (#6922)

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  fellen31

  and

  mashehu

  authored
  26cdbf2

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• Change inputs for genmod (#6928)

  fellen31

  authored
  f888300

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• Convert ultraplex to nf-test (#5706)

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  SPPearce

  and

  mahesh-panchal

  authored
  1d8a57b

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• Update conda-incubator/setup-miniconda digest to d2e6a04 (#6936)

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  renovate[bot]

  authored
  e022a63

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Commits on Nov 4, 2024

• Update pre-commit hook renovatebot/pre-commit-hooks to v39 (#6933)

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  renovate[bot]

  authored
  9deee8f

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• Set mkfastq reports and stats outputs to optional (#6932)

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  alanmmobbs93

  and

  nschcolnicov

  authored
  f7d2d43

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• New module: doubletdetection (#6897)

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  LeonHafner

  authored
  3dc1bb8

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• Update DetermineContigPloidy and GermlineCNVCaller recipes to limit CPU resource usage (#6926)

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  ramprasadn

  authored
  d6dd4dd

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• Add scAR module (#6157)

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  3 peopleauthored
  a9521c8

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• Add coptr/index tool (#6908)

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  ramirobarrantes

  and

  nf-core-bot

  authored
  4895bcc

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