Dear developers,
I installed GOMCL and replaced scripts/ with scripts/ form #13 . The program seams to run without error, however the outputs are empty.
Here's info to reproduce:
$ pwd
/home/vvshazia/GOMCL-master/GOMCL-master
$ mkdir mydata
$ wget http://geneontology.org/ontology/go-basic.obo /mydata/
$ cat >>test_generic.txt
GO-ID Genes in test set
GO:0000001 gene1|gene2|gene3|gene4|gene5
GO:0000002 gene6|gene7|gene8|gene9|gene10
GO:0000003 gene11|gene12|gene13|gene14|gene15
^C
$ GOMCL.py ./mydata/go-basic.obo test_generic.txt
[mclxIOstreamIn] no assignments yield void/empty matrix
[mcl] new tab created
___ [mclAlgorithmStart] attempting to cluster the void
[mcl] pid 8392
ite chaos time hom(avg,lo,hi) m-ie m-ex i-ex fmv
1 0.00 0.00 0.00/340282346638528859811704183484516925440.00/0.00 0.00 0.00 0.00 -2147483648
[mcl] jury pruning marks: <100,100,100>, out of 100
[mcl] jury pruning synopsis: <100.0 or really really really good> (cf -scheme, -do log)
[mcl] output is in test_generic_GOsize3000_OC_Ct0.5I1.5.enGOfltrd_OC_Ct0.5I1.5.enGOcmped.mcl.temp
[mcl] 0 clusters found
[mcl] output is in test_generic_GOsize3000_OC_Ct0.5I1.5.enGOfltrd_OC_Ct0.5I1.5.enGOcmped.mcl.temp

Please cite:
Stijn van Dongen, Graph Clustering Via a Discrete Uncoupling Process,
SIAM Journal on Matrix Analysis and Applications, 30(1):121-141, 2008.
( http://link.aip.org/link/?SJMAEL/30/121/1 )
test_generic_GOsize3000_OC_Ct0.5I1.5.enGOfltrd
$ ls -l
-rw-r--r-- 1 vvshazia vvshazia 23704 Sep 5 2023 GOMCL-py3.zip
-rwxr-xr-x 1 vvshazia vvshazia 24630 Sep 5 2023 GOMCL-sub.py
-rwxr-xr-x 1 vvshazia vvshazia 22436 Jan 10 15:41 GOMCL.py
-rw-r--r-- 1 vvshazia vvshazia 7801 Sep 5 2023 README.md
drwxr-xr-x 1 vvshazia vvshazia 4096 Jan 10 15:36 pycache
drwxr-xr-x 1 vvshazia vvshazia 4096 Jan 10 15:18 images
drwxr-xr-x 1 vvshazia vvshazia 4096 Jan 10 16:13 mydata
drwxr-xr-x 1 vvshazia vvshazia 4096 Jan 10 16:46 scripts
drwxr-xr-x 1 vvshazia vvshazia 4096 Jan 10 16:37 scripts-old
-rw-r--r-- 1 vvshazia vvshazia 153 Jan 10 16:14 test_generic.txt
-rw-r--r-- 1 vvshazia vvshazia 126 Jan 10 17:04 test_generic_GOsize3000_OC_Ct0.5I1.5.clstr
-rw-r--r-- 1 vvshazia vvshazia 134 Jan 10 17:04 test_generic_GOsize3000_OC_Ct0.5I1.5.clstrinfo
-rw-r--r-- 1 vvshazia vvshazia 38 Jan 10 17:04 test_generic_GOsize3000_OC_Ct0.5I1.5.simfltred
drwxr-xr-x 1 vvshazia vvshazia 4096 Jan 10 15:18 tests
$ cat test_generic_GOsize3000_OC_Ct0.5I1.5.enGOfltrd_OC_Ct0.5I1.5.enGOcmped.mcl.temp
cat: test_generic_GOsize3000_OC_Ct0.5I1.5.enGOfltrd_OC_Ct0.5I1.5.enGOcmped.mcl.temp: No such file or directory
$ head test_generic_GOsize3000_OC_Ct0.5I1.5.clstr
Clstr Full GO-ID Description Type Depth p-value adj p-value x.cats.test n.cats.ref X.total.test N.total.ref Genes in test set
$ head test_generic_GOsize3000_OC_Ct0.5I1.5.clstrinfo
GO.Clstr # of GOs # of genes Accum # of genes Largest size (Description) (x/n, p-value) Smallest p-value (Description) (x/n, p-value)
$ cat test_generic_GOsize3000_OC_Ct0.5I1.5.simfltred
GOtermID-A GOtermID-B Similarity (OC)