Hi Guannan,

When running the GOMCL-sub test code (GOMCL-sub.py go-basic.obo Wendrich_PNAS_SD2_LR_TMO5_H_vs_L.clstr -C 1 -gosize 2000 -I 1.8 -ssd 0 -hg 0 -hgt -hm -nw), I got the mistake that follows:

sh: 1: mcl: not found
Traceback (most recent call last):
File "/vsphhome/kelimei/software/GOMCL/GOMCL-master/GOMCL-sub.py", line 83, in
subclstr_go_clstr_dict, subclstr_gene_clstr_dict, subclstr_clstred_go_dict, subclstr_clstred_gene_dict = go_assign_cluster(os.path.splitext(args.Clstr)[0] + "GOsize" + str(args.gosize) + "" + str(args.simindex) + "_Ct" + str(args.cutoff) + "I" + str(args.inflation) + "C" + str(args.subclstr) + ".enGOfltrd", args.simindex, args.cutoff, args.inflation)
File "/vsphhome/kelimei/software/GOMCL/GOMCL-master/scripts/go_clustering.py", line 126, in go_assign_cluster
go_mclgroup_dict, gene_mclgroup_dict = go_clustering(enGOfmtfltr, SI, Ct, Inf)
File "/vsphhome/kelimei/software/GOMCL/GOMCL-master/scripts/go_clustering.py", line 100, in go_clustering
fin_mcl = open(os.path.splitext(enGOfmtfltr)[0] + "" + str(SI) + "_Ct" + str(Ct) + "I" + str(Inf) + ".enGOcmped.mcl.temp","rU")
IOError: [Errno 2] No such file or directory: 'Wendrich_PNAS_SD2_LR_TMO5_H_vs_L_GOsize2000_OC_Ct0.5I1.8_C1_OC_Ct0.5I1.8.enGOcmped.mcl.temp'

I cannot find what went wrong. Can you help me to solve this problem?

thank you!
Limei