Welcome to the official Global Parkinson's Genetics Program (GP2) code repositories!
Our latest release is release 10, last updated July 2025.
- Blog post here
- DOI: 10.5281/zenodo.15748014
- When using GP2 release 10 data please use the following acknowledgement:
“Data (DOI 10.5281/zenodo.15748014, release 10) and/or code used in the preparation of this article were obtained from Global Parkinson’s Genetics Program (GP2). GP2 is funded by the Aligning Science Across Parkinson’s (ASAP) initiative and implemented by The Michael J. Fox Foundation for Parkinson’s Research (https://gp2.org). For a complete list of GP2 members see https://gp2.org"
For a list of previous releases and DOIs, please see here
- GP2 processes the NeuroBooster array data with the GenoTools pipeline, more information here: https://github.com/GP2code/GenoTools
- GP2 processes the whole genome sequencing data with a combination of DeepVariant and GLNexus, code here: https://github.com/GP2code/GP2-WorkingGroups/tree/main/MN-DAWG-Monogenic-Data-Analysis/Terra_wdl/variant_calling/deepvariant