QIIME 2 plugin supporting taxonomic classification

🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit

kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more

Python project to validate a phylogenetic fitted models is within the limits of inference

Analysis code from the piqtree manuscript

The Journal of Open Source Software

Tools for analysis of sequence divergence

A plugin for converting a cogent3 tree to ete3 tree object

A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations

A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference

A supertree method for rooted source trees

A new approach to obtaining local copies of ensembl data

Material for SMBE 2024

Puning Wang honours analysis project 2024

Python disk-backed cache (Django-compatible). Faster than Redis and Memcached. Pure-Python.

A fast serialization and validation library, with builtin support for JSON, MessagePack, YAML, and TOML

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

MLX: An array framework for Apple silicon

Experiments for spectral cluster supertree

Materials for the Phylomania workshop

core library code

Python tools for identification and distribution of reference sequences and sequence collections

Unsynchronize asyncio

A clean book theme for scientific explanations and documentation with Sphinx

Easily turn your Click CLI into a powerful terminal application

python xml for humans

Bibtex parser for Python 3

Python RIS files parser, provides RIS files as dictionary via generator.