Biological foundation modeling from molecular to genome scale

Using R language in microbiome analysis

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Microbial analysis in TCGA data

bwa-mem2

RNA-seq aligner

A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.

QIIME 2中文文档(QIIME 2 Chinese Manual)

bioBakery tools for meta'omic profiling

Metagenome analysis pipeline

QIIME 2中文文档(QIIME 2 Chinese Manual)

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

Source for the QIIME 2 Framework (Q2F).

SRA Tools

Code, unit tests, and tutorials for running PICRUSt2