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Commits on Sep 30, 2025

• modif log to avoid too many lines to be writtent

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Commits on Sep 29, 2025

• zsh error due to variable declaration

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Commits on Sep 25, 2025

• modif bash/zsh

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  ea0b53c

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• change relative/absolute paths error

  Aurore-B

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  df7d2ec

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Commits on Sep 23, 2025

• modif method2 error config file to read

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Commits on Sep 22, 2025

• remove comment on script

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Commits on Sep 19, 2025

• grep modification to fit macos

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Commits on Sep 17, 2025

• add details for orthology in README + modify grep due to macos/linux difference

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Commits on Sep 16, 2025

• modification of orthology files in toy data

  Aurore-B

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Commits on Sep 15, 2025

• modif creation of scans env

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  f5d1a08

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• Update README

  tderrien

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Commits on Sep 8, 2025

• remove Rscript to call r scripts in bash scripts

  Aurore-B

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Commits on Sep 4, 2025

• Update README.md with upset plots

  Aurore-B

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• README modification to add links to wiki and visualization option

  Aurore-B

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  81f5a24

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• add toy data to test SCANS tool

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  3fc0bc0

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• replace config file for conda environment by script to create it

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  ae6ac43

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Commits on Aug 29, 2025

• add option to create upset plots by method and by pair

  Aurore-B

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Commits on Aug 5, 2025

• modification on process output results

  Aurore-B

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  e2e9e7b

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• add scripts to perform global analysis for method 3 + to process output for global analysis for all methods

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  85b5405

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Commits on Jul 23, 2025

• change conda yml file

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Commits on Jul 21, 2025

• debug method 2 for refseq data

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Commits on Jul 17, 2025

• conda environment update

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  7707b92

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Commits on Jul 7, 2025

• update with system requirements and remove slurm test

  Aurore-B

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Commits on Jul 3, 2025

• remove duplicated README

  Aurore-B

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  bcd11d2

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• minor files modifications following jobim reviewers: explanation added, parameters homogenization

  Aurore-B

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  35f8003

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Commits on Jul 1, 2025

• debug codes on ensembl/refseq data

  Aurore-B

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  2a5a77b

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Commits on Apr 30, 2025

• Update README.md

  Aurore-B

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Commits on Apr 14, 2025

• Update README.md

  Aurore-B

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• Update README.md with licence

  Aurore-B

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  8c96e8d

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• Create LICENSE

  Aurore-B

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  3c819c7

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• Update README.md

  Aurore-B

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  906c7d1

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• load yaml file to create conda env

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  8005b15

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Commits on Apr 11, 2025

• method3 improved to work with liftoff on multiple species + log output

  Aurore-B

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  24b5415

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Commits on Apr 9, 2025

• modification synteny scripts: sbatch to bash, modif config file

  Aurore-B

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Commits on Apr 2, 2025

• remove non-needed information

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