error when trying to model transmission with SNPs distance matrix and dates information #3
Description
Heya,
I am getting an error when trying to model transmission with SNPs distance matrix and dates information. I try the following:
> bcModel <- createModel()
> fileName <- "IDsDates.csv"
> bcModel <- setDatesFromFile(bcModel, fileName)
[1] 1991A06828 1992A08873 1992A08871 1992A08806 1993A09409 1994A00108 1994A00106 1998A01064
[9] 2001A00098 2002A00589 2004A02588 2004A02550 2004A02549 2004A02546 2004A02525 2004A02514
[17] 2004A02233 2004A02230 2004A02170 2004A02160 2004A02070 2004A02050 2004A01924 2004A01916
[25] 2005A02589 2005A02320 2005A02319 2005A02318 2005A02317 2005A01800 2005A01797 2005A01796
[33] 2005A01780 2005A01714 2005A01712 2005A01697 2005A01264 2005A01263 2005A01185 2005A01162
[41] 2005A01160 2005A01132 2005A01128 2005A01122 2005A01117 2005A01102 2005A00892 2005A00869
[49] 2005A00518 2005A00505 2005A00472 2005A00383 2005A00382 2005A00362 2005A00323 2005A00238
[57] 2005A00195 2005A00152 2005A00143 2005A00139 2006A03615 2006A03613 2006A03608 2006A02709
[65] 2006A02708 2006A02705 2006A02691 2006A02690 2006A02687 2006A01680 2006A01676 2006A01675
[73] 2006A01672 2006A01666 2006A01660 2006A01656 2006A01654 2006A01423 2006A01111 2006A01110
[81] 2006A01109 2006A01101 2006A01099 2006A01094 2006A01093 2007A03669 2007A01933 2007A01521
[89] 2005A02322 2005A02321 2006A03612 2006A01665 2006A01424 2006A02688 2006A02703 2006A01678
[97] 2007A01520 2006A01422 2006A01419 2007A00176 2006A01661 2006A01664 2006A01670 2006A01418
[105] 2006A01667 2006A01671 2006A02692 2006A02696 2006A02700 2006A02699 2006A02704 2006A02702
[113] 2006A02706 2006A02710 2006A03606 2006A03607 2006A03614 2006A01421 2006A03616 2006A03617
[121] 2006A01663 2007A01519 2007A00172 2007A00173 2007A00177 2007A00168 2007A01518 2007A00167
[129] 2007A00164 2007A01517 2007A01522 2007A01516 2007A03670 2007A01514 2010A02638 2008A04387
[137] 2010A02817 2010A02639 2010A00507 2018A00793 2008A04386 2018A00725 2018A00796 2018A00747
[145] 2018A00795 2018A00803 2018A00802 2018A00730 2018A00706 2018A00785 2018A00838 2018A00789
[153] 2018A00701 2018A00707 2018A00733 2018A00722 2018A00692 2018A00702 2018A00737 2018A00763
[161] 2018A00828 2018A00693 2018A00741 2018A00755 2018A00743 2018A00768 2018A00740 2018A00682
[169] 2018A00719 2018A00814 2018A00809 2018A00805 2018A00684 2018A00794 2018A00765 2018A00683
[177] 2018A00715 2018A00778 2018A00767 2018A00834 2018A00723 2018A00681 2018A00675 2018A00771
[185] 2018A00775 2018A00832 2018A00712 2018A00801 2018A00787 2018A00790 2018A00779 2018A00783
[193] 2018A00717 2018A00751 2018A00782 2018A00676 2018A00695 2018A00697 2018A00688 2018A00753
[201] 2018A00679 2018A01117 2018A01119 2018A01220 2018A00750 2018A01213 2018A01177 2018A01111
[209] 2018A00685 2018A00677 2018A01224 2018A01185 2018A01109 2018A00694 2018A01152 2018A01193
[217] 2018A01228 2018A01091 2018A01131 2018A01155 2018A01216 2018A01218 2018A01123 2018A01208
[225] 2018A01095 2018A01104 2018A01105 2018A01102 2018A01100 2018A01163
230 Levels: 1991A06828 1992A08806 1992A08871 1992A08873 1993A09409 1994A00106 ... 2018A01228
>
> fileName <-"pairwise_distances_dates.csv"
> bcModel <- setSNPFromFile(bcModel, fileName)
>
> bcModel
$id
[1] "1991A06828" "1992A08873" "1992A08871" "1992A08806" "1993A09409" "1994A00108" "1994A00106"
[8] "1998A01064" "2001A00098" "2002A00589" "2004A02588" "2004A02550" "2004A02549" "2004A02546"
[15] "2004A02525" "2004A02514" "2004A02233" "2004A02230" "2004A02170" "2004A02160" "2004A02070"
[22] "2004A02050" "2004A01924" "2004A01916" "2005A02589" "2005A02320" "2005A02319" "2005A02318"
[29] "2005A02317" "2005A01800" "2005A01797" "2005A01796" "2005A01780" "2005A01714" "2005A01712"
[36] "2005A01697" "2005A01264" "2005A01263" "2005A01185" "2005A01162" "2005A01160" "2005A01132"
[43] "2005A01128" "2005A01122" "2005A01117" "2005A01102" "2005A00892" "2005A00869" "2005A00518"
[50] "2005A00505" "2005A00472" "2005A00383" "2005A00382" "2005A00362" "2005A00323" "2005A00238"
[57] "2005A00195" "2005A00152" "2005A00143" "2005A00139" "2006A03615" "2006A03613" "2006A03608"
[64] "2006A02709" "2006A02708" "2006A02705" "2006A02691" "2006A02690" "2006A02687" "2006A01680"
[71] "2006A01676" "2006A01675" "2006A01672" "2006A01666" "2006A01660" "2006A01656" "2006A01654"
[78] "2006A01423" "2006A01111" "2006A01110" "2006A01109" "2006A01101" "2006A01099" "2006A01094"
[85] "2006A01093" "2007A03669" "2007A01933" "2007A01521" "2005A02322" "2005A02321" "2006A03612"
[92] "2006A01665" "2006A01424" "2006A02688" "2006A02703" "2006A01678" "2007A01520" "2006A01422"
[99] "2006A01419" "2007A00176" "2006A01661" "2006A01664" "2006A01670" "2006A01418" "2006A01667"
[106] "2006A01671" "2006A02692" "2006A02696" "2006A02700" "2006A02699" "2006A02704" "2006A02702"
[113] "2006A02706" "2006A02710" "2006A03606" "2006A03607" "2006A03614" "2006A01421" "2006A03616"
[120] "2006A03617" "2006A01663" "2007A01519" "2007A00172" "2007A00173" "2007A00177" "2007A00168"
[127] "2007A01518" "2007A00167" "2007A00164" "2007A01517" "2007A01522" "2007A01516" "2007A03670"
[134] "2007A01514" "2010A02638" "2008A04387" "2010A02817" "2010A02639" "2010A00507" "2018A00793"
[141] "2008A04386" "2018A00725" "2018A00796" "2018A00747" "2018A00795" "2018A00803" "2018A00802"
[148] "2018A00730" "2018A00706" "2018A00785" "2018A00838" "2018A00789" "2018A00701" "2018A00707"
[155] "2018A00733" "2018A00722" "2018A00692" "2018A00702" "2018A00737" "2018A00763" "2018A00828"
[162] "2018A00693" "2018A00741" "2018A00755" "2018A00743" "2018A00768" "2018A00740" "2018A00682"
[169] "2018A00719" "2018A00814" "2018A00809" "2018A00805" "2018A00684" "2018A00794" "2018A00765"
[176] "2018A00683" "2018A00715" "2018A00778" "2018A00767" "2018A00834" "2018A00723" "2018A00681"
[183] "2018A00675" "2018A00771" "2018A00775" "2018A00832" "2018A00712" "2018A00801" "2018A00787"
[190] "2018A00790" "2018A00779" "2018A00783" "2018A00717" "2018A00751" "2018A00782" "2018A00676"
[197] "2018A00695" "2018A00697" "2018A00688" "2018A00753" "2018A00679" "2018A01117" "2018A01119"
[204] "2018A01220" "2018A00750" "2018A01213" "2018A01177" "2018A01111" "2018A00685" "2018A00677"
[211] "2018A01224" "2018A01185" "2018A01109" "2018A00694" "2018A01152" "2018A01193" "2018A01228"
[218] "2018A01091" "2018A01131" "2018A01155" "2018A01216" "2018A01218" "2018A01123" "2018A01208"
[225] "2018A01095" "2018A01104" "2018A01105" "2018A01102" "2018A01100" "2018A01163"
$date
[1] "1991" "1992" "1992" "1992" "1993" "1994" "1994"
[8] "1998" "2001" "2002" "2004" "2004" "2004" "2004"
[15] "2004" "2004" "2004" "2004" "2004" "2004" "2004"
[22] "2004" "2004" "2004" "2005" "2005" "2005" "2005"
[29] "2005" "2005" "2005" "2005" "2005" "2005" "2005"
[36] "2005" "2005" "2005" "2005" "2005" "2005" "2005"
[43] "2005" "2005" "2005" "2005" "2005" "2005" "2005"
[50] "2005" "2005" "2005" "2005" "2005" "2005" "2005"
[57] "2005" "2005" "2005" "2005" "2006" "2006" "2006"
[64] "2006" "2006" "2006" "2006" "2006" "2006" "2006"
[71] "2006" "2006" "2006" "2006" "2006" "2006" "2006"
[78] "2006" "2006" "2006" "2006" "2006" "2006" "2006"
[85] "2006" "2007" "2007" "2007" "2005.09.15" "2005.11.07" "2005.11.18"
[92] "2006.01.01" "2006.01.01" "2006.02.02" "2006.03.10" "2006.03.10" "2006.03.20" "2006.03.20"
[99] "2006.03.30" "2006.04.19" "2006.04.27" "2006.05.09" "2006.05.15" "2006.05.15" "2006.05.16"
[106] "2006.05.25" "2006.06.23" "2006.06.24" "2006.07.20" "2006.07.20" "2006.07.25" "2006.07.27"
[113] "2006.08.03" "2006.08.04" "2006.08.10" "2006.08.14" "2006.09.06" "2006.09.10" "2006.09.14"
[120] "2006.09.19" "2006.09.28" "2006.10.13" "2006.11.02" "2006.11.15" "2006.11.29" "2006.12.14"
[127] "2006.12.21" "2006.12.21" "2007.01.01" "2007.01.05" "2007.01.25" "2007.02.05" "2007.02.21"
[134] "2007.03.02" "2008.07.30" "2008.08.05" "2009.04.21" "2009.06.10" "2009.06.20" "2012.11.20"
[141] "2013.05.15" "2013.08.27" "2013.10.21" "2013.10.24" "2013.12.05" "2014.01.05" "2014.01.12"
[148] "2014.01.27" "2014.04.08" "2014.05.15" "2014.08.04" "2014.10.01" "2014.12.24" "2015.01.12"
[155] "2015.02.11" "2015.02.11" "2015.02.23" "2015.02.27" "2015.03.11" "2015.03.17" "2015.03.23"
[162] "2015.05.04" "2015.06.22" "2015.06.30" "2015.08.11" "2015.09.16" "2015.09.29" "2015.09.29"
[169] "2015.09.30" "2015.12.08" "2015.12.08" "2015.12.08" "2015.12.08" "2016.01.27" "2016.03.09"
[176] "2016.03.12" "2016.03.16" "2016.04.04" "2016.04.30" "2016.05.12" "2016.05.26" "2016.07.10"
[183] "2016.07.24" "2016.07.25" "2016.08.09" "2016.08.14" "2016.09.06" "2016.09.19" "2016.10.14"
[190] "2016.10.27" "2016.11.11" "2016.11.19" "2016.11.25" "2016.12.08" "2016.12.15" "2017.01.03"
[197] "2017.01.20" "2017.02.21" "2017.03.14" "2017.03.20" "2017.04.05" "2017.04.24" "2017.05.08"
[204] "2017.05.09" "2017.05.11" "2017.05.19" "2017.05.20" "2017.05.25" "2017.05.25" "2017.06.05"
[211] "2017.06.07" "2017.06.15" "2017.06.15" "2017.06.30" "2017.07.21" "2017.09.13" "2017.09.19"
[218] "2017.09.22" "2017.09.28" "2017.09.29" "2017.10.05" "2017.10.26" "2017.11.03" "2017.11.23"
[225] "2018.01.03" "2018.01.09" "2018.01.11" "2018.01.16" "2018.01.20" "2018.02.17"
$snp
X X1991A06828 X1991A07346 X1991A07602 X1992A07856 X1992A08171 X1992A08251
[1,] "1991A06828" " 0" "281" "266" "276" "284" "197"
[2,] "1991A07346" "281" " 0" "129" "143" "147" "248"
X1992A08341 X1992A08401 X1992A08402 X1992A08561 X1992A08602 X1992A08639 X1992A08640
[1,] "199" "272" "206" "477" "209" "268" "268"
[2,] "252" "137" "259" "442" "258" "131" "131"
X1992A08654 X1992A08765 X1992A08766 X1992A08806 X1992A08871 X1992A08872 X1992A08873
[1,] "270" "278" "503" " 3" " 3" "286" " 3"
[2,] "133" "141" "468" "280" "280" "151" "280"
X1992A08893 X1993A08941 X1993A09006 X1993A09039 X1993A09161 X1993A09163 X1993A09164
[1,] "488" "482" "203" "267" "211" "281" "273"
[2,] "453" "447" "254" "128" "266" "144" "136"
X1993A09347 X1993A09409 X1993A09486 X1993A09582 X1993A09751 X1994A00039 X1994A00106
[1,] "274" " 5" "281" "281" "288" "199" " 4"
[2,] "137" "282" "144" "144" "153" "250" "281"
X1994A00107 X1994A00108 X1998A01064 X1998A01091 X1998A01092 X2001A00098 X2002A00589
[1,] " 6" " 5" " 6" "932" "932" " 7" " 4"
[2,] "283" "282" "283" "897" "897" "284" "281"
X2004A01916 X2004A01921 X2004A01924 X2004A02050 X2004A02070 X2004A02102 X2004A02154
[1,] " 9" "269" " 7" " 5" " 6" "268" "271"
[2,] "286" "132" "284" "282" "283" "129" "136"
X2004A02155 X2004A02160 X2004A02170 X2004A02230 X2004A02233 X2004A02241 X2004A02262
[1,] "271" " 10" " 8" " 8" " 8" "276" "273"
[2,] "136" "287" "285" "285" "285" "141" "138"
X2004A02272 X2004A02278 X2004A02279 X2004A02290 X2004A02514 X2004A02523 X2004A02525
[1,] "275" "270" "193" "268" " 7" "491" " 7"
[2,] "144" "135" "244" "133" "284" "456" "284"
X2004A02530 X2004A02534 X2004A02536 X2004A02537 X2004A02543 X2004A02546 X2004A02549
[1,] "265" "265" "269" "272" "268" " 6" " 9"
[2,] "128" "130" "132" "135" "129" "283" "286"
X2004A02550 X2004A02559 X2004A02562 X2004A02587 X2004A02588 X2004A02591 X2005A00139
[1,] " 8" "271" "256" "271" " 7" "269" " 7"
[2,] "285" "136" "119" "136" "284" "132" "284"
X2005A00143 X2005A00152 X2005A00195 X2005A00238 X2005A00251 X2005A00323 X2005A00362
[1,] " 7" " 8" " 9" " 6" "932" " 7" " 6"
[2,] "284" "285" "286" "283" "897" "284" "283"
X2005A00382 X2005A00383 X2005A00472 X2005A00505 X2005A00518 X2005A00869 X2005A00885
[1,] " 7" " 5" " 7" " 11" " 5" " 6" " 557"
[2,] "284" "282" "284" "288" "282" "283" " 520"
X2005A00889 X2005A00892 X2005A00921 X2005A00930 X2005A00955 X2005A01102 X2005A01117
[1,] " 8" " 8" "490" "271" "495" " 7" " 9"
[2,] "285" "285" "455" "136" "460" "284" "286"
X2005A01122 X2005A01128 X2005A01132 X2005A01160 X2005A01162 X2005A01185 X2005A01199
[1,] " 8" " 4" " 6" " 10" " 5" " 8" "420"
[2,] "285" "281" "283" "287" "282" "285" "383"
X2005A01263 X2005A01264 X2005A01697 X2005A01705 X2005A01712 X2005A01714 X2005A01763
[1,] " 7" " 9" " 6" "194" " 6" " 9" "274"
[2,] "284" "286" "283" "247" "283" "286" "139"
X2005A01780 X2005A01796 X2005A01797 X2005A01799 X2005A01800 X2005A02317 X2005A02318
[1,] " 9" " 9" " 6" "489" " 8" " 6" " 11"
[2,] "284" "286" "283" "454" "285" "283" "288"
X2005A02319 X2005A02320 X2005A02321 X2005A02322 X2005A02589 X2006A01093 X2006A01094
[1,] " 6" " 9" " 7" " 7" " 7" " 9" " 9"
[2,] "283" "286" "284" "284" "284" "286" "286"
X2006A01099 X2006A01101 X2006A01109 X2006A01110 X2006A01111 X2006A01418 X2006A01419
[1,] " 9" " 7" " 5" " 9" " 9" " 11" " 6"
[2,] "286" "284" "282" "286" "286" "288" "283"
X2006A01421 X2006A01422 X2006A01423 X2006A01424 X2006A01425 X2006A01654 X2006A01656
[1,] " 12" " 9" " 5" " 6" "490" " 6" " 12"
[2,] "289" "284" "282" "283" "455" "283" "289"
X2006A01660 X2006A01661 X2006A01663 X2006A01664 X2006A01665 X2006A01666 X2006A01667
[1,] " 6" " 9" " 9" " 9" " 9" " 9" " 7"
[2,] "283" "286" "286" "286" "286" "286" "284"
X2006A01670 X2006A01671 X2006A01672 X2006A01675 X2006A01676 X2006A01677 X2006A01678
[1,] " 9" " 11" " 10" " 8" " 6" "482" " 11"
[2,] "286" "288" "287" "285" "283" "447" "288"
X2006A01680 X2006A02687 X2006A02688 X2006A02689 X2006A02690 X2006A02691 X2006A02692
[1,] " 8" " 9" " 6" "484" " 9" " 11" " 7"
[2,] "285" "286" "283" "449" "286" "288" "284"
X2006A02693 X2006A02694 X2006A02696 X2006A02698 X2006A02699 X2006A02700 X2006A02702
[1,] "273" "933" " 7" "490" " 11" " 10" " 7"
[2,] "138" "898" "284" "455" "288" "287" "284"
X2006A02703 X2006A02704 X2006A02705 X2006A02706 X2006A02708 X2006A02709 X2006A02710
[1,] " 9" " 9" " 5" " 10" " 7" " 7" " 8"
[2,] "286" "286" "282" "287" "284" "284" "285"
X2006A02711 X2006A03606 X2006A03607 X2006A03608 X2006A03612 X2006A03613 X2006A03614
[1,] "489" " 10" " 8" " 5" " 5" " 9" " 6"
[2,] "454" "287" "285" "282" "282" "286" "283"
X2006A03615 X2006A03616 X2006A03617 X2006A03618 X2007A00164 X2007A00167 X2007A00168
[1,] " 13" " 8" " 6" "486" " 9" " 10" " 10"
[2,] "290" "285" "283" "451" "286" "287" "287"
X2007A00169 X2007A00172 X2007A00173 X2007A00176 X2007A00177 X2007A01514 X2007A01516
[1,] "490" " 6" " 9" " 5" " 6" " 7" " 7"
[2,] "455" "283" "286" "282" "283" "284" "284"
X2007A01517 X2007A01518 X2007A01519 X2007A01520 X2007A01521 X2007A01522 X2007A01933
[1,] " 7" " 6" " 9" " 8" " 6" " 10" " 13"
[2,] "284" "283" "286" "285" "283" "287" "290"
X2007A03669 X2007A03670 X2007A03708 X2008A04386 X2008A04387 X2010A00507 X2010A02638
[1,] " 11" " 10" "275" " 7" " 7" " 12" " 11"
[2,] "288" "287" "140" "284" "284" "289" "288"
X2010A02639 X2010A02817 X2018A00669 X2018A00670 X2018A00672 X2018A00673 X2018A00674
[1,] " 10" " 9" "277" "203" "503" "126" "505"
[2,] "287" "286" "142" "254" "468" "273" "470"
X2018A00675 X2018A00676 X2018A00677 X2018A00679 X2018A00680 X2018A00681 X2018A00682
[1,] " 13" " 7" " 5" " 11" "277" " 13" " 9"
[2,] "290" "284" "282" "288" "142" "290" "286"
X2018A00683 X2018A00684 X2018A00685 X2018A00686 X2018A00687 X2018A00688 X2018A00689
[1,] " 14" " 14" " 12" " 11" "499" " 6" "499"
[2,] "291" "291" "289" "288" "464" "283" "464"
X2018A00690 X2018A00691 X2018A00692 X2018A00693 X2018A00694 X2018A00695 X2018A00696
[1,] "484" "498" " 6" " 9" " 15" " 8" "480"
[2,] "449" "463" "283" "286" "292" "285" "445"
X2018A00697 X2018A00698 X2018A00699 X2018A00701 X2018A00702 X2018A00703 X2018A00705
[1,] " 7" "493" "497" " 9" " 10" "271" "273"
[2,] "284" "458" "462" "286" "287" "134" "138"
X2018A00706 X2018A00707 X2018A00708 X2018A00710 X2018A00711 X2018A00712 X2018A00713
[1,] " 10" " 7" "275" "485" "269" " 10" "500"
[2,] "287" "284" "138" "450" "132" "287" "465"
X2018A00715 X2018A00716 X2018A00717 X2018A00719 X2018A00722 X2018A00723 X2018A00724
[1,] " 11" "485" " 9" " 8" " 10" " 9" "483"
[2,] "288" "450" "286" "285" "287" "286" "450"
X2018A00725 X2018A00728 X2018A00729 X2018A00730 X2018A00732 X2018A00733 X2018A00735
[1,] " 8" " 949" "486" " 9" "496" " 11" "128"
[2,] "285" " 914" "451" "286" "461" "288" "275"
X2018A00736 X2018A00737 X2018A00740 X2018A00741 X2018A00743 X2018A00744 X2018A00745
[1,] "277" " 13" " 8" " 6" " 10" "262" "272"
[2,] "142" "290" "285" "283" "287" "127" "137"
X2018A00746 X2018A00747 X2018A00750 X2018A00751 X2018A00753 X2018A00754 X2018A00755
[1,] "487" " 8" " 12" " 14" " 6" "489" " 6"
[2,] "452" "285" "289" "291" "283" "454" "283"
X2018A00756 X2018A00758 X2018A00759 X2018A00762 X2018A00763 X2018A00764 X2018A00765
[1,] "270" "502" "491" "481" " 10" "493" " 12"
[2,] "133" "467" "456" "446" "287" "458" "289"
X2018A00766 X2018A00767 X2018A00768 X2018A00770 X2018A00771 X2018A00772 X2018A00775
[1,] "481" " 17" " 10" "460" " 12" "500" " 9"
[2,] "446" "294" "287" "425" "289" "465" "286"
X2018A00776 X2018A00777 X2018A00778 X2018A00779 X2018A00780 X2018A00782 X2018A00783
[1,] "272" "271" " 8" " 10" "487" " 10" " 9"
[2,] "137" "136" "285" "287" "452" "287" "286"
X2018A00785 X2018A00787 X2018A00788 X2018A00789 X2018A00790 X2018A00793 X2018A00794
[1,] " 8" " 14" "278" " 9" " 10" " 6" " 6"
[2,] "285" "291" "141" "286" "287" "283" "283"
X2018A00795 X2018A00796 X2018A00797 X2018A00799 X2018A00801 X2018A00802 X2018A00803
[1,] " 9" " 8" "277" "510" " 8" " 14" " 8"
[2,] "286" "285" "142" "475" "285" "291" "285"
X2018A00804 X2018A00805 X2018A00807 X2018A00809 X2018A00811 X2018A00813 X2018A00814
[1,] "499" " 9" "275" " 9" "273" "510" " 14"
[2,] "464" "286" "140" "286" "138" "475" "291"
X2018A00818 X2018A00820 X2018A00825 X2018A00828 X2018A00829 X2018A00830 X2018A00832
[1,] "498" "492" "273" " 6" "498" "496" " 5"
[2,] "463" "457" "138" "283" "463" "461" "282"
X2018A00834 X2018A00835 X2018A00838 X2018A00839 X2018A00841 X2018A01091 X2018A01095
[1,] " 8" "208" " 6" "457" "481" " 9" " 6"
[2,] "285" "259" "283" "422" "446" "286" "283"
X2018A01100 X2018A01102 X2018A01104 X2018A01105 X2018A01109 X2018A01111 X2018A01117
[1,] " 9" " 14" " 8" " 6" " 7" " 13" " 11"
[2,] "286" "291" "285" "283" "284" "290" "288"
X2018A01119 X2018A01121 X2018A01123 X2018A01125 X2018A01129 X2018A01131 X2018A01134
[1,] " 15" "483" " 16" "488" "517" " 10" "278"
[2,] "292" "448" "293" "453" "482" "287" "143"
X2018A01140 X2018A01142 X2018A01152 X2018A01153 X2018A01155 X2018A01163 X2018A01173
[1,] "477" "271" " 11" "484" " 8" " 12" "527"
[2,] "442" "136" "288" "449" "285" "289" "492"
X2018A01177 X2018A01179 X2018A01182 X2018A01183 X2018A01185 X2018A01193 X2018A01195
[1,] " 10" "277" "124" "275" " 6" " 9" "500"
[2,] "287" "142" "271" "140" "283" "286" "465"
X2018A01199 X2018A01204 X2018A01205 X2018A01208 X2018A01213 X2018A01216 X2018A01218
[1,] "522" "500" " 7" " 7" " 5" " 6" " 9"
[2,] "487" "465" "284" "284" "282" "283" "286"
X2018A01220 X2018A01224 X2018A01228 X2018A01240 X2018A01243 X2018A01245 X2018A01248
[1,] " 12" " 5" " 9" " 11" "277" "281" "498"
[2,] "289" "282" "286" "288" "140" "198" "463"
X2018A01249 X2018A01253 X2018A01256
[1,] "501" "512" "522"
[2,] "466" "477" "485"
[ reached getOption("max.print") -- omitted 378 rows ]
$tcutoff
<0 x 0 matrix>
$lambda
[1] 1
$beta
[1] 1
$perc
[1] 0.2
$thSNP
[1] 1 2 3 4 5 6 7 8 9 10
$thTrans
[1] 1 2 3 4 5 6 7 8 9 10
Which then yields:
Error in N - i : non-numeric argument to binary operator```