Commits

Branch selector

 master

User selector

All users

Datepicker

All time

Commit History

Commits on Aug 6, 2025

• Fix some modules related to the hadge pipeline (#8767)

  Show description for 6d8e4eb
  

  nictru

  and

  LuisHeinzlmeier

  authored
  6d8e4eb

  Copy full SHA for 6d8e4eb

Commits on Aug 4, 2025

• Adding bwa-mem2 mode test to bwameth/align (#8846)

  Show description for a9807fa
  mbeavitt

  authored
  a9807fa

  Copy full SHA for a9807fa

• Update bismark to 0.25 (#8845)

  Show description for 8784324
  SPPearce

  authored
  8784324

  Copy full SHA for 8784324

Commits on Aug 3, 2025

• Adding mem2 mode to bwameth/index (#8838)

  Show description for 6969ca9
  

  3 peopleauthored
  6969ca9

  Copy full SHA for 6969ca9

Commits on Aug 2, 2025

• Improve scrublet batch_col handling (#8843)

  nictru

  authored
  57325b5

  Copy full SHA for 57325b5

Commits on Aug 1, 2025

• Update `rrnatranscripts` and add new module `agat/convertgff2bed` (#8842)

  Show description for b785bb0
  

  atrigila

  and

  rannick

  authored
  b785bb0

  Copy full SHA for b785bb0

• Add scanpy/pca module (#8702)

  Show description for f4430fa
  nictru

  authored
  f4430fa

  Copy full SHA for f4430fa

• Update oras to https (#8724)

  Show description for 71e0a05
  

  5 peopleauthored
  71e0a05

  Copy full SHA for 71e0a05

• feat: Add trimal module (#8826)

  Show description for a5e2319
  

  IceGreb

  and

  vagkaratzas

  authored
  a5e2319

  Copy full SHA for a5e2319

Commits on Jul 31, 2025

• add ctatsplicing/prepgenomelib and ctatsplicing/startocancerintrons (#8144)

  Show description for 8476d6a
  

  anoronh4

  and

  delfiterradas

  authored
  8476d6a

  Copy full SHA for 8476d6a

• Move YaHS inputs to single tuple (#8833)

  Show description for f23a6c5
  prototaxites

  authored
  f23a6c5

  Copy full SHA for f23a6c5

Commits on Jul 30, 2025

• update kma/index to v1.5.0 and change to seqera containers (#8834)

  Show description for 90bb6d2
  HaidYi

  authored
  90bb6d2

  Copy full SHA for 90bb6d2

• New module: KMA (based on https://github.com/nf-core/modules/pull/7251) (#8718)

  Show description for 5138a66
  

  HaidYi

  and

  famosab

  authored
  5138a66

  Copy full SHA for 5138a66

• Add new module varscan/fpfilter (#8812)

  Show description for ff79ec0
  

  vmelichar

  and

  famosab

  authored
  ff79ec0

  Copy full SHA for ff79ec0

• Fix meta of fastqutils/info and update version to 0.25.3 (#8832)

  famosab

  authored
  bf5f37e

  Copy full SHA for bf5f37e

• New module: vizgenpostprocessing/compiletilesegmentation (#8803)

  Show description for cf734b9
  

  mcmero

  and

  famosab

  authored
  cf734b9

  Copy full SHA for cf734b9

Commits on Jul 29, 2025

• clipkit keywords (#8830)

  vagkaratzas

  authored
  5a0f7c1

  Copy full SHA for 5a0f7c1

• add new module: deeptools/multibigwigsummary (#8824)

  Show description for 6be688f
  

  ugoiannacchero

  and

  SPPearce

  authored
  6be688f

  Copy full SHA for 6be688f

• Add some keywords to copyumifromreadname (#8828)

  SPPearce

  authored
  47dbfc0

  Copy full SHA for 47dbfc0

• Remove defaults channel from cooltools/insulation (#8827)

  SPPearce

  authored
  23272c1

  Copy full SHA for 23272c1

• Update keywords from default (#8829)

  fellen31

  authored
  b679e54

  Copy full SHA for b679e54

• New module: comebin/runcomebin (#8825)

  Show description for b153ee5
  prototaxites

  authored
  b153ee5

  Copy full SHA for b153ee5

• New module: vamb/bin (#8816)

  Show description for 27e3168
  

  prototaxites

  and

  jfy133

  authored
  27e3168

  Copy full SHA for 27e3168

• `last/maf-convert`: stop exporting `fasta` when converting to `cram`. (#8822)

  Show description for c1de1f6
  charles-plessy

  authored
  c1de1f6

  Copy full SHA for c1de1f6

Commits on Jul 28, 2025

• update PDB ontology (#8819)

  mirpedrol

  authored
  7fb8d8f

  Copy full SHA for 7fb8d8f

• Run pre-commit on meta and env files for varlociraptor (#8815)

  Show description for 3179219
  famosab

  authored
  3179219

  Copy full SHA for 3179219

• Add new module varscan/processsomatic (#8810)

  Show description for 6f835e2
  

  3 peopleauthored
  6f835e2

  Copy full SHA for 6f835e2

Commits on Jul 27, 2025

• Gprofiler sources fixes (#8787)

  Show description for efc7b27
  akaviaLab

  authored
  efc7b27

  Copy full SHA for efc7b27

• Allow cram in hmmcopy/readcounter and add stubs (#8817)

  Show description for 3db80ba
  SPPearce

  authored
  3db80ba

  Copy full SHA for 3db80ba

Commits on Jul 25, 2025

• New module: Fusioninspector (#8051)

  Show description for a941208
  

  delfiterradas

  and

  mirpedrol

  authored
  a941208

  Copy full SHA for a941208

• Add new module varscan/somatic (#8809)

  Show description for 48fad1e
  

  vmelichar

  and

  famosab

  authored
  48fad1e

  Copy full SHA for 48fad1e

Commits on Jul 24, 2025

• Add new module bamreadcount (#8811)

  Show description for c5c5a32
  

  vmelichar

  and

  famosab

  authored
  c5c5a32

  Copy full SHA for c5c5a32

• Include ocm barcoding handler in cellranger/multi module (#8807)

  Show description for 80db11d
  

  fmalmeida

  and

  zxBIB Almeida,Felipe (GCBDS) EXTERNAL

  authored
  80db11d

  Copy full SHA for 80db11d

• gtdbtk/classifywf: Add GTDB DB version to versions.yml (#8795)

  Show description for 4c88242
  prototaxites

  authored
  4c88242

  Copy full SHA for 4c88242

Commits on Jul 23, 2025

• Migrate `ARRIBA_VISUALISATION` to nf-core (#8796)

  Show description for 025a6f7
  delfiterradas

  authored
  025a6f7

  Copy full SHA for 025a6f7

Pagination

Previous

Next