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Commits on Jul 26, 2016

• Big update: Implement surface area constraints

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  coltonlloyd

  committed
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Commits on Jul 13, 2016

• Comment out chaperone network by default

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  coltonlloyd

  committed
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• Changes for temperature sweeps

  

  coltonlloyd

  committed
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Commits on Jun 25, 2016

• Add membrane constraints and chaperone network

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  coltonlloyd

  committed
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Commits on Jun 13, 2016

• Merge pull request #7 from SBRG/colton_development

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  coltonlloyd

  authored
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Commits on Jun 2, 2016

• Big refactoring and add PostTranslation Reaction

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  coltonlloyd

  committed
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Commits on May 15, 2016

• Add nad flux split, correct unmodeled protein rxn

  

  coltonlloyd

  committed
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Commits on May 13, 2016

• update parameter scripts

  aebrahim

  committed
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• revert build_multi

  aebrahim

  committed
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• Add community parameter sweep

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  coltonlloyd

  committed
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Commits on Apr 7, 2016

• add nutrient limited ngam

  aebrahim

  committed
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Commits on Apr 6, 2016

• prototype 51 - dna replication

  aebrahim

  committed
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Commits on Apr 5, 2016

• global_parameter should not reuse expressions

  aebrahim

  committed
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• add anaerobic solve function

  aebrahim

  committed
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• update model after prune

  aebrahim

  committed
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Commits on Apr 4, 2016

• minor bugfix in slurm_farm

  aebrahim

  committed
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• Added global_info for storing model parameters

  

  coltonlloyd

  committed
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Commits on Apr 3, 2016

• update to prototype 50

  aebrahim

  committed
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Commits on Apr 2, 2016

• build_multi missing should be model name

  aebrahim

  committed
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• don't remove essential genes

  aebrahim

  committed
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• better handle essentiality last run

  aebrahim

  committed
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• add essentiality script

  aebrahim

  committed
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Commits on Mar 31, 2016

• build_multi adds m_to_me renaming

  aebrahim

  committed
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• Fixed bug for single gpr complexes

  

  coltonlloyd

  committed
  a74fd69

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• add mapping between m and me mets

  aebrahim

  committed
  30d3df8

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• undo workarkound in build_multi

  aebrahim

  committed
  87299c8

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• build_multi keys on model name instead of strain

  aebrahim

  committed
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Commits on Mar 30, 2016

• work around weird bug in build_multi

  aebrahim

  committed
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Commits on Mar 28, 2016

• build_multi reuses existing stoichiometric data

  aebrahim

  committed
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• fix bug in build_multi

  aebrahim

  committed
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• handle nonstandard bases in build_multi

  aebrahim

  committed
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Commits on Mar 27, 2016

• add scripts folder

  aebrahim

  committed
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Commits on Mar 25, 2016

• small bug in gam

  aebrahim

  committed
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Commits on Mar 24, 2016

• add gam to parameter_sweep.py

  aebrahim

  committed
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• add ngam variation to parameter_sweep

  aebrahim

  committed
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