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Commits on Apr 13, 2021

• FIx plasmidid tests for new contigs.fasta file (#438)

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  JoseEspinosa

  authored
  26fdebc

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• Finish rseqc modules (#439)

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  KevinMenden

  and

  drpatelh

  authored
  1d874bb

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Commits on Apr 12, 2021

• 🧸 Updated rasusa (#437)

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  thanhleviet

  authored
  c736817

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• Add kraken2 pigz multi-tool container for compressing output fastq files (#434)

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  drpatelh

  authored
  c99ab09

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• Iqtree (#435)

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  antunderwood

  and

  drpatelh

  authored
  df8910d

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• Add abacas module (#431)

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  JoseEspinosa

  and

  drpatelh

  authored
  3ac21ff

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• Move test data to nf-core/test-datasets (#432)

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  KevinMenden

  and

  drpatelh

  authored
  0b402ff

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• Add pycoqc module (#424)

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  JoseEspinosa

  authored
  2c43c39

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• add new iqtree module (#427)

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  antunderwood

  authored
  575df10

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Commits on Apr 10, 2021

• Add default publish_dir for index processes (#428)

  drpatelh

  authored
  65a3422

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• output constant sites as a val so it can be passed into iqtree (#429)

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  antunderwood

  and

  drpatelh

  authored
  212177d

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• 🏋️‍♀️ new submodule mash/sketch🕺 (#426)

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  thanhleviet

  and

  drpatelh

  authored
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Commits on Apr 9, 2021

• Update functions.nf to be more flexible for publishing by meta keys (#423)

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  drpatelh

  authored
  dce27b8

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• Update and check tests are running for all modules (#420)

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  drpatelh

  authored
  5e18e36

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• new module: rasusa (#413)

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  thanhleviet

  and

  drpatelh

  authored
  5a59e61

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• add rapidnj module (#421)

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  antunderwood

  and

  drpatelh

  authored
  ca776e7

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• Added kallistobustools/ref (#408)

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  FloWuenne

  and

  drpatelh

  authored
  0f53c3b

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• Nanoplot and sequencing_summary.txt for Nanopore test data (#364)

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  yuukiiwa

  authored
  16e8d21

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• New Snpsites module (#416)

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  3 peopleauthored
  6927f1d

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• Test PR for nf-core modules lint (#414)

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  drpatelh

  authored
  f34892c

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• Update gubbins module to use new files (#417)

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  3 peopleauthored
  63b3975

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Commits on Apr 8, 2021

• Add plasmidid module (#410)

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  JoseEspinosa

  authored
  f90dde0

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• adding fasttree module (#412)

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  antunderwood

  authored
  be390a2

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• Lint modules ci (#389)

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  edmundmiller

  and

  drpatelh

  authored
  a3684d9

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Commits on Apr 7, 2021

• new module: gubbins (#377)

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  avantonder

  and

  drpatelh

  authored
  710ab76

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• Fix tabix/bgzip version command (#407)

  drpatelh

  authored
  7c2f10f

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Commits on Apr 6, 2021

• Version bumps and minor module updates (#406)

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  drpatelh

  authored
  242fdb2

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• MethylDackel: fix version scraping (#401)

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  phue

  authored
  3b1dcc9

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• bismark/report: allow missing input data (#400)

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  phue

  authored
  6c70d65

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• update bwameth container build to match conda version (#402)

  phue

  authored
  4a15713

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Commits on Apr 1, 2021

• Restructuring spades tests whith new test data sets + fixing spades tests (#396)

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  JoseEspinosa

  and

  drpatelh

  authored
  f8e428d

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• update tests for new config (#384)

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  rpetit3

  and

  drpatelh

  authored
  c925661

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• Add tests for subread #106 (#393)

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  ntoda03

  and

  Nicholas TODA

  authored
  f126d98

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• PR for sequenzautils/bam2seqz (#395)

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  kaurravneet4123

  and

  kaurravneet4123

  authored
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Commits on Mar 28, 2021

• New modules: Fgbio callmolecularconsensusreads and sortbam (#352)

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  4 peopleauthored
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