Thanks to visit codestin.com
Credit goes to github.com

Skip to content

GEO to ENA ID conversion can fail in some cases  #28

@MrHedmad

Description

@MrHedmad

Today I ran getfastq -u GSE114740, and it failed with message Cannot convert GEO project ID to ENA alias.... However, the GEO page for that ID shows that the bioproject exists (with accession PRJNA472167), and the call getfastq -u PRJNA472167 work fine. The bioproject ID is not shown in the canonical "related links" box near the bottom of the GEO accession page, which makes me think it was not properly handled when the submission was deposited.

Perhaps looking into a fallback source of the bioproject ID might be worthwhile.

Metadata

Metadata

Assignees

No one assigned

    Labels

    bugSomething isn't workingenhancementNew feature or request

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions