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Moderate Update:

Container Updates:

  • updates iqtree2 to 2.3.4
  • updates mlst to 2.23.0-2024-06-01
  • updates datasets to 16.15.0
  • adds Yersinia to the refs that Grandeur uses for Fastani (version 2024-06-26)

Possibly breaking updates:

  • removed flag process and replaced with some groovy functions
    Note: works for me!

Closes #209
Closes #203

@erinyoung erinyoung merged commit 036787a into main Jun 27, 2024
@DrB-S
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DrB-S commented Jun 27, 2024

Thank you!

@erinyoung erinyoung deleted the update20240626 branch July 26, 2024 15:30
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Version check Add Yersinia reference strains to grandeur_ref

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