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Commits on Sep 17, 2022

• Standardized branch name in README.md:

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Commits on Aug 25, 2022

• Upgrade version to 0.4.0:

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Commits on Aug 24, 2022

• Updated SynSigEval README page and user manual.

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• Updates GitHub Action workflows

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• Updates DESCRIPTION and NEWS

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• Important fixes:

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Commits on Aug 23, 2022

• more checks on FN and FP identifiers

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• temporarily set vebose on

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• added testing / debugging messages

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• return value from mSigTools::TP_FP_FN_avg_sim changed from gt.sig to ref.sig

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• updated minor version number, updated Remotes

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• changed dependencies on ICAMSxtra to mSigTools

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Commits on Jul 3, 2022

• Updated README and package manual

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Commits on Jun 21, 2022

• `WARNING: Requires orphaned package` fixed

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• Major error fixed:

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• 1. Added "methods" in Imports

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• Fixed some warnings and notes raised by GitHub Actions:

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• Fixed dependencies in `DESCRPITON`:

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Commits on Jan 13, 2022

• Updated user manual

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• Removed catalog-reading functions for SigPro in this package, use ICAMS::ReadCatalog() instead.

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Commits on Jan 12, 2022

• Added , to fix the installation error

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• No need to specify the branch of ICAMSxtra and mSigAct, as their default branches have been updated.

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• Added dependency mSigAct

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• Only removes signatures with zero exposures when an exposure file is provided AND it is not empty.

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Commits on Jan 11, 2022

• Updated links after creating a separate branch for Liu et al. (2022):

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Commits on Dec 20, 2021

• Removed temporary workaround after ICAMSxtra has fixed wrong rownames "gt,sig" in version v0.0.8.

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• Version 0.3.1:

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• Renamed extracted sigs in SummarizeSigOneSubdir()

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Commits on Dec 16, 2021

• Renamed "match.gt.to.ex.csv" to "match.ex.to.gt.csv"

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Commits on Dec 7, 2021

• Used ICAMSxtra::TP_FP_FN_avg_sim() to obtain extraction measures.

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Commits on Nov 30, 2021

• Use Hungarian algorithm and other changes

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Commits on Nov 29, 2021

• Re-formatted some documentations.

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• Amended some documentations.

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Commits on Nov 16, 2021

• Quick fix to calculate average cosine similarity in SUmmarizeMultiRuns()

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Commits on Oct 26, 2021

• 1. Enable reading ID83 catalogs from SigProfilerExtractor TSV files.

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