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Commits on Feb 6, 2024

• Update module: bakta/bakta (#4847)

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  jasmezz

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  jfy133

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  bacae7f

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• Add tx2gene module (formerly local to rnaseq) (#4854)

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  pinin4fjords

  and

  adamrtalbot

  authored
  c884823

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• Use `samtools sort` to convert to BAM (#4858)

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  muffato

  authored
  efbf86b

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• add rhocall/viz module (#4853)

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  ramprasadn

  authored
  6ea5109

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• please do not emit channels with ch_ prefix - bam_rseqc subworkflows (#4844)

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  maxulysse

  authored
  4d4041f

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• Update bcftools view script (#4850)

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  ramprasadn

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  7157328

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Commits on Feb 5, 2024

• Update CENTRIFUGE to use repaired container that allows running evaluation scripts (#4845)

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  jfy133

  authored
  9a07a12

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• Fix linting for nf-core utility subworkflow (#4846)

  adamrtalbot

  authored
  73b63c8

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• Update bakta/baktadbdownload (#4822)

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  jasmezz

  and

  jfy133

  authored
  c007bbd

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• Convert Falco to nf-test (#4840)

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  Aratz

  authored
  a236d2c

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Commits on Feb 3, 2024

• Presto filterseq deterministic (#4806)

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  ggabernet

  and

  apeltzer

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  9182be0

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Commits on Feb 2, 2024

• CHORES: update bbsplit tests with new data organisation (#4837)

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  maxulysse

  authored
  e2b2b10

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• Fix some linting issues in rnaseq_preprocessing workflow (#4836)

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  pinin4fjords

  authored
  331a530

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• Revert "Merge branch 'master' of https://github.com/nf-core/modules"

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  apeltzer

  committed
  80edb40

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• Merge branch 'master' of https://github.com/nf-core/modules

  apeltzer

  committed
  4d1d865

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• Started working

  apeltzer

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• Update centrifuge to 1.0.4.1 (#4834)

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  jfy133

  authored
  32a99bb

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Commits on Feb 1, 2024

• Feat/bbmap_bbsplit nf-test (#4131)

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  Joon-Klaps

  and

  maxulysse

  authored
  d292266

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• Use relative test data for multiqc module (#4824)

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  adamrtalbot

  authored
  9e71d85

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• pin htslib in all samtools dependant modules (#4831)

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  maxulysse

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  1e2b7fb

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• Update chromograph containers (#4832)

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  ramprasadn

  authored
  f055122

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• Uniqify some test names to please nf-test 0.8.4 (#4829)

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  pinin4fjords

  authored
  003920c

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• pin htslib in all samtools/modules (#4828)

  maxulysse

  authored
  ce0b1ae

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• CHORES: update picard/markduplicates tests with new data organisation (#4773)

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  maxulysse

  authored
  ec833ac

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• Update genmod to 3.8.2 (#4820)

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  ramprasadn

  authored
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• Update custom/sratoolsncbisettings to only run when sra ids are provided (#4827)

  drpatelh

  authored
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Commits on Jan 31, 2024

• Add factored-out RNA-seq preprocessing subworkflow (#4813)

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  pinin4fjords

  and

  adamrtalbot

  authored
  66f9961

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• Update FASTQC to use unique names for snapshots (#4825)

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  adamrtalbot

  authored
  f4ae1d9

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• Fix stack size for collapse tool (#4821)

  apeltzer

  authored
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• bump wfmash to 0.12.5 (#4803)

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  Simon Heumos

  and

  apeltzer

  authored
  8cbeaa5

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• Bump/bclconvert (#4819)

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  matthdsm

  authored
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• Update odgi to v0.8.4 (#4811)

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  Simon Heumos

  and

  jonasscheid

  authored
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Commits on Jan 30, 2024

• Update expansionhunter tests (#4807)

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  ramprasadn

  authored
  3c4b000

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• update to nf-test 0.8.4 (#4815)

  mashehu

  authored
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• Umicollapse fastq (#4810)

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  apeltzer

  authored
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