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Commits on Aug 17, 2023

• fix bugs with first contig

  

  Ada Ma

  committed
  af3bfaf

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Commits on Jul 19, 2023

• Merge branch 'master' of https://github.com/Xarpet/parsnp

  

  Victor Huang

  committed
  82a4c8d

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• changed everything to 1-indexed

  

  Victor Huang

  committed
  c2b38f2

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• add verify script

  

  Ada Ma

  committed
  48a50ab

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Commits on Jul 18, 2023

• fix ncount

  

  Victor Huang

  committed
  f248bc6

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Commits on Jul 13, 2023

• fix multi contig reverse

  

  Victor Huang

  committed
  5116572

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• add mums

  

  Ada Ma

  committed
  729ea9a

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Commits on Jul 7, 2023

• fix off-by-ones

  

  Victor Huang

  committed
  03280de

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• fixed off-by-one

  

  Victor Huang

  committed
  2fb6666

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Commits on Apr 18, 2023

• Update README.md

  bkille

  authored
  2b74218

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Commits on Feb 12, 2023

• Replace cpu_count with scheduler. Closes #120. Thanks Eric!

  bkille

  committed
  a46d351

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Commits on Sep 9, 2022

• remove mandatory checking

  bkille

  committed
  b8875cd

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• Merge branch 'master' of github.com:marbl/parsnp

  bkille

  committed
  d634401

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• fix invalid sequence error

  bkille

  committed
  5a7a236

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Commits on Jul 9, 2022

• Merge pull request #117 from marbl/remove-abpoa

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  bkille

  authored
  3a2ef47

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• Merge branch 'master' into remove-abpoa

  bkille

  authored
  affc1ec

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• version

  bkille

  committed
  35f0d41

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Commits on Jul 8, 2022

• Replace muscle w mafft

  bkille

  committed
  7d62438

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• remove muscle binary

  bkille

  committed
  f05b982

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• fix length recording bug

  bkille

  committed
  9d659cf

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Commits on Jul 5, 2022

• Merge pull request #116 from marbl/remove-unused

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  bkille

  authored
  2221a03

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• remove unused imports

  bkille

  committed
  998ebc5

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Commits on Jul 3, 2022

• Merge pull request #115 from marbl/extend

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  bkille

  authored
  65d6a91

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• fix variable name typo

  bkille

  committed
  6ec474e

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Commits on Jul 2, 2022

• add grace period for ANI cutoff

  bkille

  committed
  36bcd14

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• refactor ani methods into one

  bkille

  committed
  6f0a0db

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• Add command-line muscle for large inter-cluster regions

  bkille

  committed
  d8da72d

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Commits on Jun 21, 2022

• add additional cutoff filtering

  bkille

  committed
  fe0d9c6

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Commits on Jun 17, 2022

• Debugging maf output

  bkille

  committed
  3eb40ca

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Commits on Jun 16, 2022

• Overextend and trim back

  bkille

  committed
  1e0b9ea

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Commits on Apr 14, 2022

• Merge pull request #110 from emollier/typos

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  bkille

  authored
  ac52f6d

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• fix two typos caught by lintian

  Show description for 80310ba
  emollier

  committed
  80310ba

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Commits on Mar 31, 2022

• fix genbank parsing error

  bkille

  committed
  bfe9f70

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• version

  bkille

  committed
  7705549

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• swap gap and mismatch penalty

  bkille

  committed
  edd771c

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