We have encountered an issue related to the use of GTF and FASTA files during our analysis. The official examples provided in your documentation use gencode.v26lift37.annotation.gtf.gz and ucsc.hg19.fasta.gz, both of which correspond to the GRCh37/hg19 genome version. However, for our analysis, we would prefer to work with the GRCh38/hg38 version of the genome. This has caused some conflicts in our workflow.

Could you kindly recommend compatible versions or provide links to the Genome annotation GTF file, FASTQ files, or the STAR indexed reference genome that we could use with GRCh38/hg38 in the context of your software?