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Commits on Jan 15, 2018

• fixed bug

  mghandi

  committed
  222cc50

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• fixed issue with delete []

  mghandi

  committed
  3abc5e1

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• added error message for duplicate sequence id in input files

  mghandi

  committed
  f9531d7

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Commits on Apr 3, 2016

• fixed the bug with >5 columns input beds

  mghandi

  committed
  5811eaf

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Commits on Mar 11, 2016

• set default alg to 2 (tree)

  mghandi

  committed
  2dea57e

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Commits on Mar 7, 2016

• update

  mghandi

  committed
  e5f7ef4

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• update documentation

  mghandi

  committed
  0e0712a

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• fixed bug with delta gkm

  mghandi

  committed
  2bc17e6

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• typo

  mghandi

  committed
  be33a4a

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• delta-svm added

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  mghandi

  committed
  96856b0

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• fixed bug with seqnames check (as.character issue)

  mghandi

  committed
  fa18d3c

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Commits on Mar 1, 2016

• bug fixed with extra spaces

  mghandi

  committed
  2de228d

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• remove extra spaces in nef.fa

  mghandi

  committed
  01d58d8

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• chr index -> chr number

  mghandi

  committed
  4fe42c5

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• 1. in outputPosFastaFN, change label from _neg_ to _pos_

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  mghandi

  committed
  884b37f

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Commits on Feb 29, 2016

• updated dependencies

  mghandi

  committed
  6317ed1

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• genNullSeqs added

  mghandi

  committed
  18108d4

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Commits on Dec 7, 2015

• update

  mghandi

  committed
  143e980

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• typo

  mghandi

  committed
  c44d04a

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• update

  mghandi

  committed
  40c0e93

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• update

  mghandi

  committed
  75f3b26

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• update

  mghandi

  committed
  bcc16ec

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• updated

  mghandi

  committed
  9a3ced1

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• output refined (now outputs cvpreds and aucs)

  mghandi

  committed
  463c61c

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• removed returned value

  mghandi

  committed
  b296b81

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Commits on Dec 6, 2015

• added shinking=False default, and added auc scores outputs

  mghandi

  committed
  687d0f5

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Commits on Dec 1, 2015

• outputCVpredfn

  mghandi

  committed
  1621fb1

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• check for duplicated seq IDs in input files

  mghandi

  committed
  54e2c99

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• incremented max params cnt

  mghandi

  committed
  c444bba

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• -T bug fixed

  mghandi

  committed
  3ee3bdb

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Commits on Nov 30, 2015

• added multi-thread and output cvpred options

  mghandi

  committed
  75ce605

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Commits on Jul 29, 2015

• added support for multi line sequences (if sequences with same name exists in the fasta file, they are merged)

  mghandi

  committed
  ea0f1d7

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Commits on Jul 4, 2015

• bug fixed in gkmsvm_rainCV (niter replaced by nrepeat)

  mghandi

  committed
  72dc656

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• added gkmsvm_trainCV which uses repeated CV to find optimal C , and also generates ROC curves

  mghandi

  committed
  10ea978

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Commits on Jul 3, 2015

• replaced nullptr by NULL to avoid compile error in older GCC versions

  mghandi

  committed
  520f06c

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