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Commits on Feb 12, 2024

• Update README.md

  mikesovic

  authored
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Commits on Oct 22, 2022

• added vignette html to inst/doc

  mikesovic

  committed
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• removed docs/ dir

  mikesovic

  committed
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• added doc/ dir

  mikesovic

  committed
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• updated function names to eliminate duplicate function names

  mikesovic

  committed
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Commits on Oct 21, 2022

• updated documentation for v3.5.0

  mikesovic

  committed
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• converted pngs to jpgs for vignette

  mikesovic

  committed
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• initial push of v3.5.0

  mikesovic

  committed
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• deleted hidden file from legacy

  mikesovic

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Commits on Aug 22, 2022

• updated html file

  mikesovic

  committed
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• updated Rmd file

  mikesovic

  committed
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• added edit_fq_names.pl file

  mikesovic

  committed
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• updated Rmd file

  mikesovic

  committed
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Commits on Aug 4, 2022

• added copy of SARS-CoV-2 lineage.muts file

  mikesovic

  committed
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• renamed Mtub lineage muts file

  mikesovic

  committed
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Commits on Jul 21, 2022

• added workshop_files dir

  mikesovic

  committed
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Commits on May 10, 2022

• added code associated with analyses (.html)

  mikesovic

  committed
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• added code associated with analysis (.Rmd)

  mikesovic

  committed
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• added wastewater example infiles

  mikesovic

  committed
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Commits on May 7, 2022

• added location/date file for ww_example

  mikesovic

  committed
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Commits on May 6, 2022

• added expected Mtub lineage proportions

  mikesovic

  committed
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• added expected mut numbers for Mtub analysis

  mikesovic

  committed
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• added lineage_muts file for Mtub analysis

  mikesovic

  committed
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• added file with expected lineage proportions

  mikesovic

  committed
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• added dir with files associated with mixvir paper

  mikesovic

  committed
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Commits on May 2, 2022

• updates for CRAN compatibility: shortened title; revised description

  mikesovic

  committed
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• removed bulk_vcf_to_mixvir() function

  mikesovic

  committed
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• update for CRAN compatibility: add Value field

  mikesovic

  committed
  76a39e6

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• update for CRAN compatibility: new 'removed.genes' option

  mikesovic

  committed
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• update for CRAN compatibility: new 'removed.genes' option

  mikesovic

  committed
  a7330dd

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• update for CRAN compatibility: replace print() with message()

  mikesovic

  committed
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• update for CRAN compatibility: add Value field

  mikesovic

  committed
  da31292

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• removed hidden file

  mikesovic

  committed
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• removed bulk_vcf_to_mixvir man file

  mikesovic

  committed
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Commits on Apr 28, 2022

• updated README

  mikesovic

  committed
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