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Commits on Aug 21, 2025

• Broadcast variants DB via HDFS instead of SparkFiles (#27)

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Commits on Aug 20, 2025

• parallelize spark download in CI (#24)

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Commits on Apr 20, 2025

• update CI ubuntu version (#18)

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Commits on Aug 16, 2024

• fix AllQC configs

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  36ce38a

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Commits on May 28, 2024

• add GxS config (#15)

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Commits on Feb 29, 2024

• adjust partitioning in variant discovery (#14)

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• variant discovery optimization & logging (#13)

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  0c07d1c

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Commits on Feb 18, 2024

• AllQC coverage improvements (#12)

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Commits on Feb 9, 2024

• Update README.md

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• Update README.md

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• Update README.md

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• Update README.md

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• Update README.md

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  b56a1ed

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• Update README.md

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  d2b153c

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• Update README.md

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Commits on Feb 8, 2024

• output JAR from CI

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• Update README.md

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• spVCF decoding: use --with-missing-fields only with AllQC

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Commits on Jan 22, 2024

• log config loading

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  84495ab

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• DeepVariant config rework (#11)

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Commits on Dec 18, 2023

• rename project to GLnext (#10)

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Commits on Nov 26, 2023

• relax premature EOF check

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Commits on Nov 12, 2023

• use WES calibration factors

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Commits on Nov 5, 2023

• provide correct PLs for genotype revision

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Commits on Oct 29, 2023

• enable DeepVariantExtra on dxapplet

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  3307223

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• spVCF v1.3.2

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  e049714

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• genotype revision (#9)

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• add DeepVariantExtra config to populate AD & PL from reference bands (#8)

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  94bdae2

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Commits on Oct 2, 2023

• fix dx invocation

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  5856803

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• add wip/ to .gitignore

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  3111347

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• use spVCF v1.3.1 --with-missing-fields

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Commits on Sep 3, 2023

• premature EOF safeguards

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  9197b7b

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Commits on Sep 1, 2023

• gs: URI support

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  5505265

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• allow HDFS manifest

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  4492e94

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• add dx readme

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