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Commits on Jun 4, 2023

• add --with-missing-fields decoder option (#28)

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Commits on Jun 2, 2023

• ensure up-to-date libdeflate is used

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• update to htslib 1.17 and libdeflate 1.18 (#27)

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Commits on Jan 7, 2022

• add GitHub Actions build, modernizing docker image & WDL

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• Fix dropped QC field in cells without DP

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Commits on Dec 18, 2020

• app note doi

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Commits on Nov 10, 2020

• Fail-fast if libdeflate isn't available

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Commits on Aug 27, 2020

• Update README.md

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• Update README.md

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• Update README.md

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Commits on Aug 4, 2020

• update deploy key

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• modernize WDL

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Commits on Aug 3, 2020

• htslib 1.10

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Commits on Nov 5, 2019

• reduce buffer reallocation in multithreaded encoder

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Commits on May 16, 2019

• Update README.md

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• Create 1000G_NYGC_GATK.md

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Commits on Apr 19, 2019

• Update README.md

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Commits on Apr 18, 2019

• Update README.md

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• Update README.md

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Commits on Apr 1, 2019

• v1.0.0 🍾

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Commits on Mar 26, 2019

• configurable resolution for DP squeezing (#21)

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Commits on Mar 14, 2019

• expand WDL

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Commits on Mar 13, 2019

• wdl v0.7.0

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• change ##fileformat to and fro

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• htslib 1.9

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• encode: make QC-squeezing opt-out instead of opt-in

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Commits on Feb 5, 2019

• Update SPEC.md

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• a bit of input validation (closes #14)

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Commits on Oct 16, 2018

• Update spvcf.wdl

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Commits on Oct 14, 2018

• Update README.md

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Commits on Oct 4, 2018

• Update README.md

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Commits on Oct 2, 2018

• Spec change: never quote-encode cells whose genotypes aren't reference-identical or non-called

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Commits on Aug 29, 2018

• Multithreaded encoder (#13)

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Commits on Aug 27, 2018

• Improve stdin/stdout streaming performance

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Commits on Aug 23, 2018

• Fix - as input filename

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