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Commits on Feb 12, 2026

• docs:replace workflow description with flowchart (#778)

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  dennishendriksen

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• Support new style adaptive sampling file (#775)

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  bartcharbon

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Commits on Feb 11, 2026

• fix: gvcf workflow with sample sheet cram (#777)

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  dennishendriksen

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Commits on Feb 10, 2026

• Move to bcgsc straglr version (#773)

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  bartcharbon

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  dennishendriksen

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• Fix GreenDb index bug (#776)

  bartcharbon

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Commits on Jan 30, 2026

• Check whether the user supplied parameters are valid (#771)

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  MatthieuBeukers

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Commits on Jan 27, 2026

• Select HPO term by default in report and show HPO labels instead of ID's (#770)

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  bartcharbon

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Commits on Jan 6, 2026

• fix: accidental ']' in docs

  dennishendriksen

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Commits on Jan 5, 2026

• Update nextflow to 25.10.2 (#769)

  MatthieuBeukers

  authored
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• Update documentation with new example report and images (#767)

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  MatthieuBeukers

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Commits on Dec 18, 2025

• Add 0-byte validation for samplesheet and files noted in the samplesheet (#768)

  MatthieuBeukers

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Commits on Dec 16, 2025

• Chore/v9.0.0 (#766)

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  bartcharbon

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Commits on Dec 15, 2025

• Chore/v9.0.0 (#765)

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  bartcharbon

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• Feat/add hmtvar trna annotation (#764)

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  MatthieuBeukers

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Commits on Dec 5, 2025

• Update VKGL and ClinVar and update VKGL LB and LP tests (#763)

  MatthieuBeukers

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Commits on Dec 2, 2025

• Merge pull request #759 from molgenis/chore/updateCuteSv

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  MatthieuBeukers

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Commits on Dec 1, 2025

• Update md5sum, .def file and config for cuteSV

  bartcharbon

  committed
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• Update CuteSV to commit with IUPAC fix

  bartcharbon

  committed
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• Use X/Y specific settings for deepvariant/trio (#760)

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  bartcharbon

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Commits on Nov 27, 2025

• Update mtDNA BLB/PLP test with mitotip and apogee scores and changed … (#752)

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  MatthieuBeukers

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• Bump vip-report (8.0.2) (#761)

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  bartcharbon

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Commits on Nov 25, 2025

• Fix #751: awk: Argument list too long + Fix report template and metadata.json (#758)

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  bartcharbon

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Commits on Nov 24, 2025

• Update to vip-report 8.0.0 (#757)

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  bartcharbon

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Commits on Nov 6, 2025

• test/Add japanese BLB and PLP variants tests (#754)

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  MatthieuBeukers

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Commits on Oct 28, 2025

• refactor/Add curly brackets to base_url variable in test scripts (#753)

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  MatthieuBeukers

  authored
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• test: Add mtdna fazzini gold standard test (#748)

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  MatthieuBeukers

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Commits on Sep 26, 2025

• test: Add mtdna BLB and PLP unittests and necesasry files (#747)

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  MatthieuBeukers

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Commits on Sep 18, 2025

• refactor: remove duplicate cli arg from vep annotate call (#744)

  dennishendriksen

  authored
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Commits on Sep 16, 2025

• build: bump version 8.4.4 to 8.4.5

  dennishendriksen

  committed
  9d0c34b

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• fix #742 params.vcf.annotate.annotsv_cache_dir incorrect (#743)

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  dennishendriksen

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Commits on Sep 12, 2025

• build: bump version 8.4.3 to 8.4.4

  dennishendriksen

  committed
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• feat: bump cutesv 2.1.1 to 2.1.3 (#741)

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  dennishendriksen

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Commits on Sep 9, 2025

• build: bump version 8.4.2 to 8.4.3

  dennishendriksen

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• fix: create_gnomad.sh COV_joint values (#740)

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  dennishendriksen

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Commits on Sep 4, 2025

• build: bump version 8.4.1 to 8.4.2

  dennishendriksen

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