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A versatile and scalable algorithm for rogue taxon identification

www.exelixis-lab.org

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Name		Name	Last commit message	Last commit date
Latest commit History 29 Commits
Array.c		Array.c
Array.h		Array.h
BitVector.c		BitVector.c
BitVector.h		BitVector.h
Dropset.c		Dropset.c
Dropset.h		Dropset.h
HashTable.c		HashTable.c
HashTable.h		HashTable.h
List.c		List.c
List.h		List.h
Makefile		Makefile
Node.c		Node.c
Node.h		Node.h
ProfileElem.c		ProfileElem.c
ProfileElem.h		ProfileElem.h
README		README
RogueNaRok.c		RogueNaRok.c
Tree.c		Tree.c
Tree.h		Tree.h
common.c		common.c
common.h		common.h
legacy.c		legacy.c
legacy.h		legacy.h
newFunctions.c		newFunctions.c
newFunctions.h		newFunctions.h
parallel.c		parallel.c
parallel.h		parallel.h
rnr-lsi.c		rnr-lsi.c
rnr-mast.c		rnr-mast.c
rnr-prune.c		rnr-prune.c
rnr-tii.c		rnr-tii.c
sharedVariables.h		sharedVariables.h

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RogueNaRok is an algorithm for the identification of rogue taxa in a tree set.

How do I install it?

Download the code and run the "make" command.

For a parallel version of the RogueNaRok algorithm, use "make
mode=parallel". Note that, the parallel version requires the
pthreads-library. Running one of the programs without arguments will
trigger the help message. Just follow the instructions.

More info is available on
https://github.com/aberer/RogueNaRok/wiki/RogueNaRok . Also, use this
site for reporting bugs, ask questions of how to employ RogueNaRok.