Hi there!
Could you help me spotting the problem? The error I am getting is:
ERROR: Please check design file: Invalid number of columns (should be 6)

Even though I specify --single-end, the output when running the pipeline says that the data type is paired-end. The design file looks like this:
group,replicate,fastq_1,fastq_2,antibody,control
s1,1,s1.R1.fastq,,ab1,,
s2,1,s2.R1.fastq,,ab2,,
s3,1,s3.R1.fastq,,ab3,,

Is there anything wrong with it?
Thank you very much in advance!
Katrin