Hi again,

I am going through Documentation/results_description.html to understand which output I have. I do not find bwa/mergedLibrary/macs2/consensus/deseq2. Instead, I find bwa/mergedLibrary/macs/consensus and qc, i.e. no macs2 and no further deseq2 subdirectories. Can you comment on that? Were you still running macs2, but no deseq2?

Many thanks in advance!
Katrin