Several processes are using tools that are maybe interesting also in other pipeline and could be made available in nf-core/modules, such as:

• modules/local/canu.nf
• modules/local/dfast.nf
• modules/local/medaka.nf
• modules/local/miniasm.nf
• modules/local/nanopolish.nf
• modules/local/porechop.nf

Other processes use local modules because the nf-core modules were not applicable:

• modules/local/pycoqc.nf -> only accepts fast5 summary files, no raw fast5 files
• modules/local/nanoplot.nf -> only accepts accepts only .fastq.gz, not .fq.gz
• modules/local/minimap_align.nf -> inout path does not match nf.core module, might be possible to fix in bacass
• modules/local/unicycler.nf -> only allows short read assembly (but not hybrid and long)