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Commits on May 10, 2021

• correct linting

  antunderwood

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• Add information on mapping to chromosomal sequence only

  antunderwood

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• Add information on MultiQC outputs

  antunderwood

  committed
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Commits on May 9, 2021

• Add timestamp to pipeline info files to allow -resume on AWS

  antunderwood

  committed
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Commits on May 8, 2021

• truncate reference name if too long

  antunderwood

  committed
  f5ad2bb

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• Correct vcf2psuedogenome and reference_to_single_sequence for multiple

  antunderwood

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Commits on May 7, 2021

• Merge pull request #35 from avantonder/dev

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  antunderwood

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  df7fa7c

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• multiqc edits

  avantonder

  committed
  1af026f

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• Remove unhelpful help!

  antunderwood

  committed
  8f719c0

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• Update show_hidden_params param type in schema

  antunderwood

  committed
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Commits on May 6, 2021

• Merge pull request #2 from nf-core/dsl2

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  antunderwood

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• Update multiqc config and fix linting

  antunderwood

  committed
  ef1105b

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• Merge remote-tracking branch 'avantonder/dev' into dsl2

  antunderwood

  committed
  060c0ec

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• multiqc yaml edit

  avantonder

  committed
  035b591

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• Update Bactmap_pipeline.png

  antunderwood

  committed
  34f5835

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• Merge pull request #1 from nf-core/dsl2

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  antunderwood

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Commits on May 5, 2021

• fix linting

  antunderwood

  committed
  177d836

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• update to latest linting

  antunderwood

  committed
  61274a2

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• update to latest multiQC

  antunderwood

  committed
  aef6184

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• Revert to remote tests

  antunderwood

  authored
  221f200

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• cater for multiple sequences in a reference

  antunderwood

  committed
  4d8d916

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• add remote test sequences back

  antunderwood

  committed
  23f35cc

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• add multiqc

  avantonder

  committed
  0bd37ab

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• add multiqc

  avantonder

  committed
  c551224

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• add multiqc

  avantonder

  committed
  8b82db6

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• add multiqc

  avantonder

  committed
  20a54f0

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• add multiqc

  avantonder

  committed
  d65ecac

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Commits on May 3, 2021

• Merge pull request #32 from nf-core/dsl2

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  ggabernet

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Commits on Apr 30, 2021

• remove argument from snp-sites

  antunderwood

  committed
  4ca6a80

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• Merge pull request #31 from nf-core/dsl2

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  antunderwood

  authored
  25324aa

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• update linting to match 1.13 version of tools

  antunderwood

  committed
  8ac60a5

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• update params and revert NfcoreSchema function names

  antunderwood

  committed
  5868a37

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• fix linting issues

  antunderwood

  committed
  ab4d52d

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• update to latest lib functions and move email to workflow

  antunderwood

  committed
  8c9354f

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• Add completion email to bactmap workflow

  antunderwood

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