From 58fb1f0e5b67e4210233bfcd3721da1815683eab Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=C3=85shild=20J=2E=20V=C3=A5gene?= <60298098+ashildv@users.noreply.github.com> Date: Mon, 19 Apr 2021 17:21:02 +0000 Subject: [PATCH 1/3] Update nextflow_schema.json update to "min_adapter_overlap" parameter for AdapterRemoval in doc --- nextflow_schema.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nextflow_schema.json b/nextflow_schema.json index 0e7a9e623..39268135b 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -484,7 +484,7 @@ "default": 1, "description": "Specify minimum adapter overlap required for clipping.", "fa_icon": "fas fa-hands-helping", - "help_text": "Sets the minimum overlap between two reads when read merging is performed. Default is set to `1` base overlap.\n\n> Modifies AdapterRemoval parameter: `--minadapteroverlap`" + "help_text": "Specifies a minimum number of bases that overlap with the adapter sequence before adapters are trimmed from reads. Default is set to `1` base overlap.\n\n> Modifies AdapterRemoval parameter: `--minadapteroverlap`" }, "skip_collapse": { "type": "boolean", From 2f6e3cc1bef45329609bd24018b82614a06ebe8a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=C3=85shild=20J=2E=20V=C3=A5gene?= <60298098+ashildv@users.noreply.github.com> Date: Tue, 20 Apr 2021 12:10:30 +0000 Subject: [PATCH 2/3] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 0c107de7c..4293bbf70 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,6 +8,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### `Added` ### `Fixed` +- Corrected explanation of the "--min_adap_overlap" parameter for AdapterRemoval in the docs ### `Dependencies` From cae516147def89fe5f942fa6dcbcedcfaccdb11a Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Tue, 20 Apr 2021 15:30:26 +0200 Subject: [PATCH 3/3] Update CHANGELOG.md --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 4293bbf70..48b48b15f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,6 +8,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0. ### `Added` ### `Fixed` + - Corrected explanation of the "--min_adap_overlap" parameter for AdapterRemoval in the docs ### `Dependencies`